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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2ed5SAHDiphthine synthase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2ed5SAHDiphthine synthase/1.000
2el0SAHDiphthine synthase/0.841
2dxwSAHDiphthine synthase/0.802
2ejkSAHDiphthine synthase/0.802
2p6kSAHDiphthine synthase/0.790
2dv4SAHDiphthine synthase/0.783
2dv7SAHDiphthine synthase/0.783
2p5cSAHDiphthine synthase/0.783
2eniSAHDiphthine synthase/0.782
2dxvSAHDiphthine synthase/0.781
2p5fSAHDiphthine synthase/0.781
1wngSAHDiphthine synthase/0.772
2owkSAHDiphthine synthase/0.768
2dsiSAHDiphthine synthase/0.761
2egsSAHDiphthine synthase/0.747
2p2xSAHDiphthine synthase/0.743
2z6rSAHDiphthine synthase/0.741
2emrSAHDiphthine synthase/0.732
2e8sSAHDiphthine synthase/0.724
2e8qSAHDiphthine synthase/0.720
2dxxSAHDiphthine synthase/0.719
2eeqSAHDiphthine synthase/0.719
2hutSAHDiphthine synthase/0.716
2e17SAHDiphthine synthase/0.709
2dsgSAHDiphthine synthase/0.707
2eh4SAHDiphthine synthase/0.707
2huvSAHDiphthine synthase/0.706
2eh2SAHDiphthine synthase/0.705
2ek2SAHDiphthine synthase/0.705
2ek7SAHDiphthine synthase/0.704
2e4nSAHDiphthine synthase/0.700
2p6iSAHDiphthine synthase/0.700
2owuSAHDiphthine synthase/0.698
2ehlSAHDiphthine synthase/0.697
2owgSAHDiphthine synthase/0.696
2dv5SAHDiphthine synthase/0.690
2pb5SAHDiphthine synthase/0.690
2p6dSAHDiphthine synthase/0.681
2pb4SAHDiphthine synthase/0.681
2pb6SAHDiphthine synthase/0.681
2eglSAHDiphthine synthase/0.679
2pcaSAHDiphthine synthase/0.675
2e07SAHDiphthine synthase/0.674
2ek3SAHDiphthine synthase/0.674
2e7rSAHDiphthine synthase/0.672
2egbSAHDiphthine synthase/0.671
2eh5SAHDiphthine synthase/0.669
2pcmSAHDiphthine synthase/0.668
2ekaSAHDiphthine synthase/0.666
2huxSAHDiphthine synthase/0.666
2emuSAHDiphthine synthase/0.658
2ejjSAHDiphthine synthase/0.654
2p9dSAHDiphthine synthase/0.654
1vceSAHDiphthine synthase/0.648
2en5SAHDiphthine synthase/0.647
2pckSAHDiphthine synthase/0.645
2hr8SAHDiphthine synthase/0.644
2dv3SAHDiphthine synthase/0.639
2e15SAHDiphthine synthase/0.637
2huqSAHDiphthine synthase/0.637
2e08SAHDiphthine synthase/0.633
2pchSAHDiphthine synthase/0.633
2eleSAHDiphthine synthase/0.632
2ek4SAHDiphthine synthase/0.630
2el3SAHDiphthine synthase/0.627
2owvSAHDiphthine synthase/0.623
2pciSAHDiphthine synthase/0.620
2eldSAHDiphthine synthase/0.618
2e8rSAHDiphthine synthase/0.614
2e16SAHDiphthine synthase/0.613
2e8hSAHDiphthine synthase/0.599
2pcgSAHDiphthine synthase/0.599
2ed3SAHDiphthine synthase/0.586
2owfSAHDiphthine synthase/0.582
2dekSAHDiphthine synthase/0.551
2p6lSAHDiphthine synthase/0.528
2dshSAHDiphthine synthase/0.524
2ejzSAHDiphthine synthase/0.515
1tqf32PBeta-secretase 13.4.23.460.459
2cf6NAPCinnamyl alcohol dehydrogenase 51.1.1.1950.455
3b70NAPEnoyl reductase LovC10.453
3r6sCMPCRP-like cAMP-activated global transcriptional regulator/0.453
3lqfNADGalactitol dehydrogenase/0.449
1xe55FEPlasmepsin-23.4.23.390.448
1f8fNADBenzyl alcohol dehydrogenase/0.447
2ojtUBAGlutamate receptor ionotropic, kainate 1/0.447
2gjnFMNNitronate monooxygenase1.13.12.160.445
2qs3UBEGlutamate receptor ionotropic, kainate 1/0.444
3zh8C58Protein kinase C iota type2.7.11.130.444
2q4bNAPUncharacterized protein At5g02240/0.442
3up5FAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase1.14.13.1600.441