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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2e8rSAHDiphthine synthase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2e8rSAHDiphthine synthase/1.000
2eleSAHDiphthine synthase/0.811
2el3SAHDiphthine synthase/0.786
2owkSAHDiphthine synthase/0.771
2pcgSAHDiphthine synthase/0.752
2owgSAHDiphthine synthase/0.743
2huvSAHDiphthine synthase/0.725
2ehlSAHDiphthine synthase/0.713
2p6dSAHDiphthine synthase/0.712
2eldSAHDiphthine synthase/0.698
2e7rSAHDiphthine synthase/0.692
2e4nSAHDiphthine synthase/0.690
2eh2SAHDiphthine synthase/0.688
2p5fSAHDiphthine synthase/0.657
2e15SAHDiphthine synthase/0.650
2dv5SAHDiphthine synthase/0.649
2dsiSAHDiphthine synthase/0.647
2p5cSAHDiphthine synthase/0.647
2pckSAHDiphthine synthase/0.646
2eniSAHDiphthine synthase/0.645
2pb5SAHDiphthine synthase/0.645
2emuSAHDiphthine synthase/0.644
2hutSAHDiphthine synthase/0.644
2p9dSAHDiphthine synthase/0.642
2eh5SAHDiphthine synthase/0.634
2emrSAHDiphthine synthase/0.630
2p2xSAHDiphthine synthase/0.628
2dxxSAHDiphthine synthase/0.624
2ek3SAHDiphthine synthase/0.622
2e07SAHDiphthine synthase/0.621
2ek4SAHDiphthine synthase/0.621
2eh4SAHDiphthine synthase/0.619
2pb6SAHDiphthine synthase/0.619
2huqSAHDiphthine synthase/0.617
2ekaSAHDiphthine synthase/0.612
2ek2SAHDiphthine synthase/0.610
2e17SAHDiphthine synthase/0.609
2p6iSAHDiphthine synthase/0.609
2pcaSAHDiphthine synthase/0.608
2z6rSAHDiphthine synthase/0.602
2e08SAHDiphthine synthase/0.593
2e8sSAHDiphthine synthase/0.592
2ejkSAHDiphthine synthase/0.586
2owuSAHDiphthine synthase/0.573
1vceSAHDiphthine synthase/0.571
2pchSAHDiphthine synthase/0.571
2p6kSAHDiphthine synthase/0.570
2dsgSAHDiphthine synthase/0.569
2ejjSAHDiphthine synthase/0.566
2hr8SAHDiphthine synthase/0.566
2ed5SAHDiphthine synthase/0.561
2pciSAHDiphthine synthase/0.561
2dv3SAHDiphthine synthase/0.560
2dxvSAHDiphthine synthase/0.560
2dv7SAHDiphthine synthase/0.558
2dxwSAHDiphthine synthase/0.558
2dshSAHDiphthine synthase/0.557
2egbSAHDiphthine synthase/0.553
2el0SAHDiphthine synthase/0.552
2huxSAHDiphthine synthase/0.549
1wngSAHDiphthine synthase/0.545
2pcmSAHDiphthine synthase/0.545
2eeqSAHDiphthine synthase/0.534
2e8qSAHDiphthine synthase/0.531
2ek7SAHDiphthine synthase/0.525
2pb4SAHDiphthine synthase/0.521
2dv4SAHDiphthine synthase/0.519
2egsSAHDiphthine synthase/0.517
2e8hSAHDiphthine synthase/0.513
2e16SAHDiphthine synthase/0.510
2ed3SAHDiphthine synthase/0.510
2owfSAHDiphthine synthase/0.505
2en5SAHDiphthine synthase/0.500
2p6lSAHDiphthine synthase/0.497
2dekSAHDiphthine synthase/0.495
2owvSAHDiphthine synthase/0.484
2ejzSAHDiphthine synthase/0.465
2eglSAHDiphthine synthase/0.464