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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
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Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2dshSAHDiphthine synthase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2dshSAHDiphthine synthase/1.000
2pb5SAHDiphthine synthase/0.697
2eeqSAHDiphthine synthase/0.692
2p5cSAHDiphthine synthase/0.640
2e07SAHDiphthine synthase/0.632
2e7rSAHDiphthine synthase/0.629
2dsiSAHDiphthine synthase/0.625
2ejjSAHDiphthine synthase/0.618
2eh4SAHDiphthine synthase/0.609
2p6kSAHDiphthine synthase/0.609
2pckSAHDiphthine synthase/0.605
2huqSAHDiphthine synthase/0.591
2p6iSAHDiphthine synthase/0.588
2dxxSAHDiphthine synthase/0.579
2owgSAHDiphthine synthase/0.569
2ed3SAHDiphthine synthase/0.568
2e08SAHDiphthine synthase/0.566
2p9dSAHDiphthine synthase/0.558
2egbSAHDiphthine synthase/0.555
2huvSAHDiphthine synthase/0.554
2p2xSAHDiphthine synthase/0.552
2pcaSAHDiphthine synthase/0.547
2e15SAHDiphthine synthase/0.543
2owuSAHDiphthine synthase/0.542
2dv5SAHDiphthine synthase/0.534
2p6lSAHDiphthine synthase/0.529
2e4nSAHDiphthine synthase/0.521
2dv3SAHDiphthine synthase/0.519
2ejzSAHDiphthine synthase/0.516
2p5fSAHDiphthine synthase/0.516
1wngSAHDiphthine synthase/0.513
2z6rSAHDiphthine synthase/0.511
2e8sSAHDiphthine synthase/0.510
2dv4SAHDiphthine synthase/0.509
1vceSAHDiphthine synthase/0.504
2egsSAHDiphthine synthase/0.503
2hr8SAHDiphthine synthase/0.501
2pciSAHDiphthine synthase/0.498
2e8rSAHDiphthine synthase/0.496
2pchSAHDiphthine synthase/0.495
2eniSAHDiphthine synthase/0.490
2pcgSAHDiphthine synthase/0.490
2e16SAHDiphthine synthase/0.486
2e17SAHDiphthine synthase/0.486
2ek3SAHDiphthine synthase/0.486
2el3SAHDiphthine synthase/0.486
2dekSAHDiphthine synthase/0.483
2e8hSAHDiphthine synthase/0.483
2eglSAHDiphthine synthase/0.478
2huxSAHDiphthine synthase/0.477
2owvSAHDiphthine synthase/0.477
2dv7SAHDiphthine synthase/0.468
2el0SAHDiphthine synthase/0.467
2dsgSAHDiphthine synthase/0.463
2hutSAHDiphthine synthase/0.463
2ed5SAHDiphthine synthase/0.462
2en5SAHDiphthine synthase/0.458
2eldSAHDiphthine synthase/0.457
2owfSAHDiphthine synthase/0.456
2p6dSAHDiphthine synthase/0.455
2owkSAHDiphthine synthase/0.453
2e8qSAHDiphthine synthase/0.450
2ejkSAHDiphthine synthase/0.448
2pb6SAHDiphthine synthase/0.448
2ek2SAHDiphthine synthase/0.447