sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Distribution of Cavity similarities measured by Shaper

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Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
2c7q	SAH	Modification methylase HhaI	2.1.1.37

Complex with similar cavities

PDB ID	HET	Uniprot Name	EC Number	Cavity Similarity	Align
2c7q	SAH	Modification methylase HhaI	2.1.1.37	1.000
2uyh	SAH	Modification methylase HhaI	2.1.1.37	0.645
5mht	SAH	Modification methylase HhaI	2.1.1.37	0.618
7mht	SAH	Modification methylase HhaI	2.1.1.37	0.613
2zcj	SAH	Modification methylase HhaI	2.1.1.37	0.602
8mht	SAH	Modification methylase HhaI	2.1.1.37	0.583
3mht	SAH	Modification methylase HhaI	2.1.1.37	0.573
1mht	SAH	Modification methylase HhaI	2.1.1.37	0.556
1skm	SAH	Modification methylase HhaI	2.1.1.37	0.456
2z6u	SAH	Modification methylase HhaI	2.1.1.37	0.454