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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2bxqIMNSerum albumin

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2bxqIMNSerum albumin/1.000
3b9lAZZSerum albumin/0.742
2xvv9DNSerum albumin/0.729
2bxmIMNSerum albumin/0.691
2xvw9NRSerum albumin/0.641
2qd4CHDFerrochelatase, mitochondrial4.99.1.10.472
4lb2DM5Serum albumin/0.456
3w1wCHDFerrochelatase, mitochondrial4.99.1.10.455
1v35NAIEnoyl-ACP reductase/0.454
1pkfEPDEpothilone C/D epoxidase1.140.449
3ziaADPATP synthase subunit beta, mitochondrial3.6.3.140.442
2gjnFMNNitronate monooxygenase1.13.12.160.440