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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2bxaC1FSerum albumin

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2bxaC1FSerum albumin/1.000
1hk2T44Serum albumin/0.604
2ydfIO3Serum albumin/0.597
1hk1T44Serum albumin/0.560
2bx8AZQSerum albumin/0.559
2xvu9DNSerum albumin/0.546
1hk3T44Serum albumin/0.537
2bxiAZQSerum albumin/0.504
3lu7IPXSerum albumin/0.504
4z69DIFSerum albumin/0.501
2bxnIDBSerum albumin/0.485
4jboWPHAurora kinase A2.7.11.10.454
3vn9ANKDual specificity mitogen-activated protein kinase kinase 62.7.12.20.443
4fj0NAP17beta-hydroxysteroid dehydrogenase/0.441