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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2b5j3ACGag-Pol polyprotein2.7.7.49

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2b5j3ACGag-Pol polyprotein2.7.7.491.000
4h4o506Gag-Pol polyprotein2.7.7.490.587
2be2R22Gag-Pol polyprotein2.7.7.490.569
4rw6494Gag-Pol polyprotein2.7.7.490.562
4h4m494Gag-Pol polyprotein2.7.7.490.552
2wonZZEGag-Pol polyprotein2.7.7.490.537
4mfb29TGag-Pol polyprotein2.7.7.490.537
4rw4494Gag-Pol polyprotein2.7.7.490.535
3dyaPZLGag-Pol polyprotein2.7.7.490.529
3c6tM14Gag-Pol polyprotein2.7.7.490.527
3c6uM22Gag-Pol polyprotein2.7.7.490.526
3lalKRVGag-Pol polyprotein2.7.7.490.524
3dokGWJPol protein/0.518
3t1a5MAGag-Pol polyprotein2.7.7.490.513
4lsl1YQGag-Pol polyprotein2.7.7.490.508
3drpR8EGag-Pol polyprotein2.7.7.490.504
3t195MAGag-Pol polyprotein2.7.7.490.502
2ynfWHUGag-Pol polyprotein2.7.7.490.499
3drrR8EGag-Pol polyprotein2.7.7.490.497
3dlgGWEGag-Pol polyprotein2.7.7.490.493
3lakKR1Gag-Pol polyprotein2.7.7.490.486
3dolGWIPol protein/0.482
3irxUDRGag-Pol polyprotein2.7.7.490.482
3tamM06Gag-Pol polyprotein2.7.7.490.469
1rt1MKCGag-Pol polyprotein2.7.7.490.467
3dmjGWEPol protein/0.467
2ynhEURGag-Pol polyprotein2.7.7.490.464
1c1bGCAGag-Pol polyprotein2.7.7.490.461
3qlhT27Gag-Pol polyprotein2.7.7.490.451
3nbpJGZGag-Pol polyprotein2.7.7.490.450
3dleGFAGag-Pol polyprotein2.7.7.490.449
1rt2TNKGag-Pol polyprotein2.7.7.490.440