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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2b1i93ABifunctional purine biosynthesis protein PURH2.1.2.3

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2b1i93ABifunctional purine biosynthesis protein PURH2.1.2.31.000
1m9nAMZBifunctional purine biosynthesis protein PURH2.1.2.30.557
1oz0MS1Bifunctional purine biosynthesis protein PURH2.1.2.30.529
4a1oAMZBifunctional purine biosynthesis protein PurH2.1.2.30.451
1p4r354Bifunctional purine biosynthesis protein PURH2.1.2.30.445