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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2b04CHOPhospholipase A2, major isoenzyme3.1.1.4

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2b04CHOPhospholipase A2, major isoenzyme3.1.1.41.000
2b01TUDPhospholipase A2, major isoenzyme3.1.1.40.606
2azzTCHPhospholipase A2, major isoenzyme3.1.1.40.495
2b03TUDPhospholipase A2, major isoenzyme3.1.1.40.465
4bb3KKAIsopenicillin N synthase1.21.3.10.445