sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Distribution of Cavity similarities measured by Shaper

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Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
2abb	FMN	Pentaerythritol tetranitrate reductase

Complex with similar cavities

PDB ID	HET	Uniprot Name	EC Number	Cavity Similarity	Align
2abb	FMN	Pentaerythritol tetranitrate reductase	/	1.000
3p74	FMN	Pentaerythritol tetranitrate reductase	/	0.704
3p62	FMN	Pentaerythritol tetranitrate reductase	/	0.612
1h50	FMN	Pentaerythritol tetranitrate reductase	/	0.582
1vyr	FMN	Pentaerythritol tetranitrate reductase	/	0.567
3f03	FMN	Pentaerythritol tetranitrate reductase	/	0.562
1h63	FMN	Pentaerythritol tetranitrate reductase	/	0.556
3p8i	FMN	Pentaerythritol tetranitrate reductase	/	0.532
3p82	FMN	Pentaerythritol tetranitrate reductase	/	0.519
1h51	FMN	Pentaerythritol tetranitrate reductase	/	0.509
3p8j	FMN	Pentaerythritol tetranitrate reductase	/	0.501
4jic	FMN	GTN Reductase	/	0.498
3p67	FMN	Pentaerythritol tetranitrate reductase	/	0.489
3p84	FMN	Pentaerythritol tetranitrate reductase	/	0.477
1ics	FMN	12-oxophytodienoate reductase 1	1.3.1.42	0.475
1icp	FMN	12-oxophytodienoate reductase 1	1.3.1.42	0.462