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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1z1fSTLResveratrol synthase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1z1fSTLResveratrol synthase/1.000
1u0wSTLChalcone synthase 22.3.1.740.471
1e6wNAD3-hydroxyacyl-CoA dehydrogenase type-21.1.1.350.455
4bb3KKAIsopenicillin N synthase1.21.3.10.448
2w9sTOPDihydrofolate reductase type 1 from Tn40031.5.1.30.445
4kzoNAPIsocitrate dehydrogenase [NADP] cytoplasmic1.1.1.420.440