sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Cavities are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 1yrd | CAM | Camphor 5-monooxygenase | 1.14.15.1 |
| PDB ID | HET | Uniprot Name | EC Number | Cavity Similarity |
Align |
|---|---|---|---|---|---|
| 1yrd | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 1.000 | |
| 1yrc | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.701 | |
| 1t88 | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.680 | |
| 6cp4 | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.677 | |
| 2feu | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.676 | |
| 3wrm | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.676 | |
| 3wrh | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.674 | |
| 1dz6 | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.672 | |
| 2zax | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.671 | |
| 3wrj | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.671 | |
| 1t86 | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.668 | |
| 3fwg | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.668 | |
| 1dz4 | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.666 | |
| 4l49 | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.664 | |
| 1noo | CAH | Camphor 5-monooxygenase | 1.14.15.1 | 0.660 | |
| 1uyu | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.658 | |
| 1t87 | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.657 | |
| 3fwf | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.657 | |
| 4kky | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.657 | |
| 3l63 | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.656 | |
| 2a1n | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.655 | |
| 1iwj | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.647 | |
| 4l4b | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.646 | |
| 3fwi | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.645 | |
| 3wrl | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.645 | |
| 1t85 | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.644 | |
| 4l4f | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.644 | |
| 1dz8 | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.642 | |
| 3fwj | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.642 | |
| 4g3r | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.641 | |
| 4l4c | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.640 | |
| 3cpp | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.639 | |
| 4l4a | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.639 | |
| 1iwi | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.638 | |
| 2cpp | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.638 | |
| 2a1m | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.635 | |
| 4cp4 | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.635 | |
| 4ek1 | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.635 | |
| 1phg | MYT | Camphor 5-monooxygenase | 1.14.15.1 | 0.630 | |
| 2a1o | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.625 | |
| 2zui | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.624 | |
| 4l4e | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.622 | |
| 1o76 | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.621 | |
| 2qbl | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.617 | |
| 2qbo | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.616 | |
| 2zaw | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.615 | |
| 1geb | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.614 | |
| 5cp4 | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.614 | |
| 2m56 | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.613 | |
| 2z97 | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.609 | |
| 2qbn | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.608 | |
| 2qbm | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.603 | |
| 1phe | PIY | Camphor 5-monooxygenase | 1.14.15.1 | 0.599 | |
| 4l4d | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.599 | |
| 3lxi | CAM | Cytochrome P450 | / | 0.597 | |
| 4jx1 | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.592 | |
| 4jx1 | CAH | Camphor 5-monooxygenase | 1.14.15.1 | 0.582 | |
| 3p6p | A6B | Camphor 5-monooxygenase | 1.14.15.1 | 0.569 | |
| 4c9o | CAM | Cytochrome P450 | / | 0.565 | |
| 4c9p | CAM | Cytochrome P450 | / | 0.558 | |
| 1rf9 | DBR | Camphor 5-monooxygenase | 1.14.15.1 | 0.556 | |
| 1re9 | DSO | Camphor 5-monooxygenase | 1.14.15.1 | 0.552 | |
| 3ol5 | SAW | Camphor 5-monooxygenase | 1.14.15.1 | 0.546 | |
| 1jip | KTN | 6-deoxyerythronolide B hydroxylase | / | 0.540 | |
| 5hs1 | VOR | Lanosterol 14-alpha demethylase | / | 0.521 | |
| 1jio | DEB | 6-deoxyerythronolide B hydroxylase | / | 0.503 | |
| 3ruk | AER | Steroid 17-alpha-hydroxylase/17,20 lyase | / | 0.502 | |
| 4uym | VOR | 14-alpha sterol demethylase Cyp51B | / | 0.500 | |
| 3mdm | FJZ | Cholesterol 24-hydroxylase | / | 0.493 | |
| 4l6g | CNL | 1,8-cineole 2-endo-monooxygenase | 1.14.13.156 | 0.493 | |
| 2z3u | CRR | Cytochrome P450 | / | 0.489 | |
| 2q9f | C3S | Cholesterol 24-hydroxylase | / | 0.486 | |
| 4lxj | LAN | Lanosterol 14-alpha demethylase | 1.14.13.70 | 0.483 | |
| 3mdv | CL6 | Cholesterol 24-hydroxylase | / | 0.482 | |
| 4i8v | BHF | Cytochrome P450 1A1 | 1.14.14.1 | 0.482 | |
| 1pkf | EPD | Epothilone C/D epoxidase | 1.14 | 0.480 | |
| 4tuv | CPZ | Cytochrome P450 119 | 1.14 | 0.480 | |
| 1eup | ASD | 6-deoxyerythronolide B hydroxylase | / | 0.477 | |
| 1q5d | EPB | Epothilone C/D epoxidase | 1.14 | 0.477 | |
| 3ibd | CPZ | Cytochrome P450 2B6 | 1.14.13 | 0.477 | |
| 4nkv | AER | Steroid 17-alpha-hydroxylase/17,20 lyase | / | 0.475 | |
| 4lht | CNL | 1,8-cineole 2-endo-monooxygenase | 1.14.13.156 | 0.474 | |
| 4y8w | STR | Steroid 21-hydroxylase | / | 0.474 | |
| 3tk3 | CPZ | Cytochrome P450 2B4 | 1.14.14.1 | 0.471 | |
| 4j6b | PLO | Cytochrome P450 monooxygenase | / | 0.470 | |
| 1suo | CPZ | Cytochrome P450 2B4 | 1.14.14.1 | 0.467 | |
| 2w0b | CMW | Lanosterol 14-alpha demethylase | 1.14.13.70 | 0.466 | |
| 4jbt | ASD | Cytochrome P450 monooxygenase | / | 0.466 | |
| 3qm4 | PN0 | Cytochrome P450 2D6 | / | 0.465 | |
| 4j6c | STR | Cytochrome P450 monooxygenase | / | 0.462 | |
| 1x8v | ESL | Lanosterol 14-alpha demethylase | 1.14.13.70 | 0.461 | |
| 4fmx | CNL | 1,8-cineole 2-endo-monooxygenase | 1.14.13.156 | 0.458 | |
| 4ejh | 0QA | Cytochrome P450 2A13 | 1.14.14.1 | 0.457 | |
| 1t2b | CNL | 1,8-cineole 2-endo-monooxygenase | 1.14.13.156 | 0.454 | |
| 4enh | FVX | Cholesterol 24-hydroxylase | / | 0.454 | |
| 2vzm | NRB | Cytochrome P450 monooxygenase PikC | / | 0.453 | |
| 3t3q | 9PL | Cytochrome P450 2A6 | 1.14.13 | 0.453 | |
| 4dvq | 1CA | Cytochrome P450 11B2, mitochondrial | 1.14.15.4 | 0.452 | |
| 4r21 | STR | Cytochrome P450 family 17 polypeptide 2 | / | 0.452 | |
| 4b7d | QLE | Cytochrome P450 monooxygenase PikC | / | 0.450 | |
| 4ejg | NCT | Cytochrome P450 2A13 | 1.14.14.1 | 0.450 | |
| 3tda | PN0 | Cytochrome P450 2D6 | / | 0.449 | |
| 4j6d | TES | Cytochrome P450 monooxygenase | / | 0.448 | |
| 3s79 | ASD | Aromatase | 1.14.14.14 | 0.446 | |
| 3t3r | 9PL | Cytochrome P450 2A6 | 1.14.13 | 0.442 | |
| 3tjs | D0R | Cytochrome P450 3A4 | / | 0.441 |