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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1yluFMNOxygen-insensitive NAD(P)H nitroreductase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1yluFMNOxygen-insensitive NAD(P)H nitroreductase/1.000
1ykiFMNOxygen-insensitive NAD(P)H nitroreductase/0.639
1ylrFMNOxygen-insensitive NAD(P)H nitroreductase/0.568
1kqcFMNOxygen-insensitive NAD(P)H nitroreductase/0.562
1kqbFMNOxygen-insensitive NAD(P)H nitroreductase/0.559
1kqdFMNOxygen-insensitive NAD(P)H nitroreductase/0.559
3x22FMNOxygen-insensitive NAD(P)H nitroreductase/0.531
1ds7FMNOxygen-insensitive NAD(P)H nitroreductase/0.517
1ooqFMNOxygen-insensitive NAD(P)H nitroreductase/0.505
1icuFMNOxygen-insensitive NAD(P)H nitroreductase/0.501
1oonFMNOxygen-insensitive NAD(P)H nitroreductase/0.492
1oo5FMNOxygen-insensitive NAD(P)H nitroreductase/0.488
1necFMNOxygen-insensitive NAD(P)H nitroreductase10.469