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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1y5xE89Queuine tRNA-ribosyltransferase2.4.2.29

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1y5xE89Queuine tRNA-ribosyltransferase2.4.2.291.000
1q4wDQUQueuine tRNA-ribosyltransferase2.4.2.290.593
2z1xPRFQueuine tRNA-ribosyltransferase2.4.2.290.562
2qzrS79Queuine tRNA-ribosyltransferase2.4.2.290.535
3gc4AAQQueuine tRNA-ribosyltransferase2.4.2.290.534
3ge7AFQQueuine tRNA-ribosyltransferase2.4.2.290.523
1efzPRFQueuine tRNA-ribosyltransferase2.4.2.290.522
2bbf344Queuine tRNA-ribosyltransferase2.4.2.290.519
4gg90WWQueuine tRNA-ribosyltransferase2.4.2.290.519
4gh10WXQueuine tRNA-ribosyltransferase2.4.2.290.519
1q63AIQQueuine tRNA-ribosyltransferase2.4.2.290.517
1y5vNE8Queuine tRNA-ribosyltransferase2.4.2.290.513
3sm0AEKQueuine tRNA-ribosyltransferase2.4.2.290.511
1ozqPRFQueuine tRNA-ribosyltransferase2.4.2.290.510
3gc52MQQueuine tRNA-ribosyltransferase2.4.2.290.509
4gi40EXQueuine tRNA-ribosyltransferase2.4.2.290.509
4gh30EVQueuine tRNA-ribosyltransferase2.4.2.290.501
4fps0UXQueuine tRNA-ribosyltransferase2.4.2.290.491
4gkt0O1Queuine tRNA-ribosyltransferase2.4.2.290.482
1y5wNEZQueuine tRNA-ribosyltransferase2.4.2.290.480
2z1wBDIQueuine tRNA-ribosyltransferase2.4.2.290.479
4fr10V2Queuine tRNA-ribosyltransferase2.4.2.290.479
4giy0WYQueuine tRNA-ribosyltransferase2.4.2.290.476
1f3eDPZQueuine tRNA-ribosyltransferase2.4.2.290.462
1n2vBDIQueuine tRNA-ribosyltransferase2.4.2.290.456
4fsa0V3Queuine tRNA-ribosyltransferase2.4.2.290.451
1q66KMBQueuine tRNA-ribosyltransferase2.4.2.290.447
4q8pCKRQueuine tRNA-ribosyltransferase2.4.2.290.445
3fhxPXLPyridoxal kinase2.7.1.350.442
3vetADPnebramycin 5' synthase6.1.2.20.441