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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1xudPB4Collagenase 33.4.24

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1xudPB4Collagenase 33.4.241.000
1xucPB3Collagenase 33.4.240.873
1xurPB5Collagenase 33.4.240.502
2ow9SP6Collagenase 33.4.240.482
2yig5ELCollagenase 33.4.240.464
4a7b3W4Collagenase 33.4.240.464
3kek3EKCollagenase 33.4.240.460