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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1w87FADFerredoxin--NADP reductase1.18.1.2

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1w87FADFerredoxin--NADP reductase1.18.1.21.000
3zc3FADFerredoxin--NADP reductase1.18.1.20.605
1gjrFADFerredoxin--NADP reductase1.18.1.20.573
1amoFADNADPH--cytochrome P450 reductase/0.558
1go2FADFerredoxin--NADP reductase1.18.1.20.557
3vo2FADFerredoxin--NADP reductase/0.557
4af7FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic1.18.1.20.556
3fpkFADFerredoxin-NADP reductase/0.553
4bprFADFerredoxin--NADP reductase1.18.1.20.552
4af6FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic1.18.1.20.551
1w35FADFerredoxin--NADP reductase1.18.1.20.549
1qgyFADFerredoxin--NADP reductase1.18.1.20.546
1gawFADFerredoxin/0.545
1qh0FADFerredoxin--NADP reductase1.18.1.20.544
1bx1FADFerredoxin--NADP reductase, chloroplastic1.18.1.20.541
1h85FADFerredoxin--NADP reductase1.18.1.20.541
1e64FADFerredoxin--NADP reductase1.18.1.20.539
3w5uFADFerredoxin/0.536
1fncFDAFerredoxin--NADP reductase, chloroplastic1.18.1.20.534
1sm4FADFerredoxin--NADP reductase/0.530
4c43FADFerredoxin--NADP reductase1.18.1.20.527
4yaoFADNADPH--cytochrome P450 reductase/0.527
1gaqFADFerredoxin/0.525
1queFADFerredoxin--NADP reductase1.18.1.20.525
1h42FADFerredoxin--NADP reductase1.18.1.20.523
1fndFADFerredoxin--NADP reductase, chloroplastic1.18.1.20.522
1fnbFADFerredoxin--NADP reductase, chloroplastic1.18.1.20.521
3mhpFADFerredoxin--NADP reductase, leaf isozyme, chloroplastic1.18.1.20.520
3zbtFADFerredoxin--NADP reductase1.18.1.20.519
2ok8FADFerredoxin--NADP reductase, apicoplast/0.516
1bjkFADFerredoxin--NADP reductase1.18.1.20.515
3qfcFADNADPH--cytochrome P450 reductase/0.511
1e63FADFerredoxin--NADP reductase1.18.1.20.510
3qfsFADNADPH--cytochrome P450 reductase/0.507
1ewyFADFerredoxin--NADP reductase1.18.1.20.504
2b5oFADFerredoxin--NADP reductase1.18.1.20.503
4y9uFADNADPH--cytochrome P450 reductase/0.503
2rc6FADFerredoxin--NADP reductase/0.502
1b2rFADFerredoxin--NADP reductase1.18.1.20.496
1ja1FADNADPH--cytochrome P450 reductase/0.493
2xncFADFerredoxin--NADP reductase, leaf isozyme, chloroplastic1.18.1.20.490
1qgzFADFerredoxin--NADP reductase1.18.1.20.485
4uajFADNa(+)-translocating NADH-quinone reductase subunit F/0.484
1ogiFADFerredoxin--NADP reductase1.18.1.20.482
3qftFADNADPH--cytochrome P450 reductase/0.482
1f20FADNitric oxide synthase, brain1.14.13.390.477
2rc5FADFerredoxin--NADP reductase/0.477
1e62FADFerredoxin--NADP reductase1.18.1.20.476
1j9zFADNADPH--cytochrome P450 reductase/0.471
1ogjFADFerredoxin--NADP reductase1.18.1.20.465
1fdrFADFerredoxin--NADP reductase1.18.1.20.463
1gr1FADFerredoxin--NADP reductase1.18.1.20.461
4a30QMIGlycylpeptide N-tetradecanoyltransferase/0.458
3ojxFADNADPH--cytochrome P450 reductase/0.456
4a322CDGlycylpeptide N-tetradecanoyltransferase/0.455
3jqrFADFerredoxin--NADP reductase, apicoplast/0.453
2cndFADNitrate reductase [NADH]1.7.1.10.447
3jyoNADQuinate/shikimate dehydrogenase (NAD(+))/0.446
1ptjNAPNAD(P) transhydrogenase subunit beta1.6.1.20.445
1bx0FADFerredoxin--NADP reductase, chloroplastic1.18.1.20.444
4cax646Glycylpeptide N-tetradecanoyltransferase2.3.1.970.442
1kyvRBF6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.441
2d1yNADOxidoreductase, short-chain dehydrogenase/reductase family/0.441