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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1w83L11Mitogen-activated protein kinase 14

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity
Align
1w83L11Mitogen-activated protein kinase 14/1.000
3gcq1BUMitogen-activated protein kinase 14/0.537
3hv3R49Mitogen-activated protein kinase 14/0.513
2ewaSB2Mitogen-activated protein kinase 14/0.506
4fk3325Serine/threonine-protein kinase B-raf2.7.11.10.506
3l8sBFFMitogen-activated protein kinase 14/0.502
3njoPYVAbscisic acid receptor PYR1/0.502
4fnyI3KALK tyrosine kinase receptor2.7.10.10.502
3qpnPFKcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.501
3lfeZ84Mitogen-activated protein kinase 14/0.499
3d7zGK5Mitogen-activated protein kinase 14/0.497
3o8tBMUMitogen-activated protein kinase 14/0.492
2ovyPFJcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.489
3qppPFWcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.488
3b8q900Vascular endothelial growth factor receptor 22.7.10.10.487
3prfFP3Serine/threonine-protein kinase B-raf2.7.11.10.484
3ctj320Hepatocyte growth factor receptor2.7.10.10.483
3p9tTCLRepressor/0.483
3sgv2BJDitrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific)2.5.1.310.483
5bvw1N1Epithelial discoidin domain-containing receptor 12.7.10.10.480
3eta351Insulin receptor2.7.10.10.479
4eh60ONMitogen-activated protein kinase 14/0.478
1rftPXMPyridoxal kinase2.7.1.350.477
4eh70OOMitogen-activated protein kinase 14/0.476
2jc6QPPCalcium/calmodulin-dependent protein kinase type 1D2.7.11.170.475
4h1j0YHProtein-tyrosine kinase 2-beta2.7.10.20.475
1og5SWFCytochrome P450 2C9/0.474
2agvTG1Sarcoplasmic/endoplasmic reticulum calcium ATPase 13.6.3.80.474
2ydoADNAdenosine receptor A2a/0.474
2zb45OPProstaglandin reductase 21.3.1.480.474
3irm1CYBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.474
2fb8215Serine/threonine-protein kinase B-raf2.7.11.10.473
1uwhBAXSerine/threonine-protein kinase B-raf2.7.11.10.471
2b365PPEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.471
2uxuNARHTH-type transcriptional regulator TtgR/0.471
4rh10TTSpore photoproduct lyase/0.470
4uugPXGBranched-chain amino acid aminotransferase, putative/0.470
4i6h1C8Serine/threonine-protein kinase PLK22.7.11.210.469
3dt1P40Mitogen-activated protein kinase 14/0.467
4cjx9L9C-1-tetrahydrofolate synthase, cytoplasmic, putative/0.465
2uxpCLMHTH-type transcriptional regulator TtgR/0.463
3eel53TUncharacterized protein/0.463
4mvh2F5cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.463
3fmkFMKMitogen-activated protein kinase 14/0.462
2j3jHC4NADPH-dependent oxidoreductase 2-alkenal reductase1.3.1.740.461
2uxhQUEHTH-type transcriptional regulator TtgR/0.461
1ly4COQDihydrofolate reductase1.5.1.30.460
3fi4FI4Mitogen-activated protein kinase 14/0.460
3th8TH9Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific)2.5.1.310.460
4heu15JcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.460
4n3l2FNProthrombin3.4.21.50.460
4xe606UDihydrofolate reductase1.5.1.30.460
1kijNOVDNA gyrase subunit B/0.459
1m13HYFNuclear receptor subfamily 1 group I member 2/0.459
1p7tACOMalate synthase G/0.459
2x7hPFNProstaglandin reductase 310.459
3oezSTIProto-oncogene tyrosine-protein kinase Src2.7.10.20.459
3tubFPUTyrosine-protein kinase SYK2.7.10.20.459
4eufNADTrans-2-enoyl-CoA reductase [NADH]/0.459
1kmvLIIDihydrofolate reductase1.5.1.30.458
3flzFLZMitogen-activated protein kinase 14/0.458
3vrwYS5Vitamin D3 receptor/0.458
4c1iEH9cGMP-dependent 3',5'-cyclic phosphodiesterase3.1.4.170.458
4qrc0LIFibroblast growth factor receptor 42.7.10.10.458
2oh4GIGVascular endothelial growth factor receptor 22.7.10.10.457
2xkc4VQSerine/threonine-protein kinase Nek22.7.11.10.456
3p3zP3ZPutative cytochrome P450/0.456
4ea13RXDehydrosqualene synthase/0.456
4ehyADPTetraacyldisaccharide 4'-kinase/0.456
4jbtASDCytochrome P450 monooxygenase/0.456
4phlPILPhosphodiesterase/0.456
1p91SAM23S rRNA (guanine(745)-N(1))-methyltransferase/0.455
3hcrCHDFerrochelatase, mitochondrial4.99.1.10.455
4biwANPSensor histidine kinase CpxA/0.455
4tzt468Enoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.455
1m78CLZDihydrofolate reductase1.5.1.30.454
1vruAAPGag-Pol polyprotein2.7.7.490.454
3eon341Glutaryl-CoA dehydrogenase/0.454
3qlrNDPDihydrofolate reductase1.5.1.30.454
3vt65YIVitamin D3 receptor/0.454
4eqrFADCoenzyme A disulfide reductase/0.454
4g34924Eukaryotic translation initiation factor 2-alpha kinase 32.7.11.10.454
4z2tFAD2-hydroxybiphenyl-3-monooxygenase/0.454
1c7oPPGHemolysin/0.453
1dljUGAUDP-glucose 6-dehydrogenase/0.453
1nquRDL6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.453
1vbiNADMalate/L-lactate dehydrogenase family protein/0.453
1xoqROFcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.453
2og81N8Tyrosine-protein kinase Lck2.7.10.20.453
2opsHBQGag-Pol polyprotein2.7.7.490.453
3ar6TG1Sarcoplasmic/endoplasmic reticulum calcium ATPase 13.6.3.80.453
3ituIBMcGMP-dependent 3',5'-cyclic phosphodiesterase3.1.4.170.453
4nb6444Nuclear receptor ROR-gamma/0.453
1osvCHCBile acid receptor/0.452
2a59LMZ6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.452
2b378PSEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.452
2hb8MVDVitamin D3 receptor/0.452
2hpsCTZCa2+-triggered coelenterazine-binding protein 1/0.452
2obxINI6,7-dimethyl-8-ribityllumazine synthase 22.5.1.780.452
3fzt4JZProtein-tyrosine kinase 2-beta2.7.10.20.452
3qm4PN0Cytochrome P450 2D6/0.452
4g1nNZTPyruvate kinase PKM2.7.1.400.452
4g310WHEukaryotic translation initiation factor 2-alpha kinase 32.7.11.10.452
1ygjRMCPyridoxal kinase2.7.1.350.451
2ydvNECAdenosine receptor A2a/0.451
3cseN22Uncharacterized protein/0.451
3fln3FNMitogen-activated protein kinase 14/0.451
4dquNAIEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.451
4htx19FcGMP-dependent 3',5'-cyclic phosphodiesterase3.1.4.170.451
4olfHFGProline--tRNA ligase6.1.1.150.451
4yx6FMNOmega-3 polyunsaturated fatty acid synthase subunit PfaD/0.451
1ezfIN0Squalene synthase2.5.1.210.450
2gpvOHTEstrogen-related receptor gamma/0.450
2qd5CHDFerrochelatase, mitochondrial4.99.1.10.450
3l9mL9McAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.450
3tdaPN0Cytochrome P450 2D6/0.450
4j6bPLOCytochrome P450 monooxygenase/0.450
4jln18VDeoxycytidine kinase2.7.1.740.450
5d7pOCZNAD-dependent protein deacetylase sirtuin-23.5.10.450
5jtbZMAAdenosine receptor A2a/0.450
1fgiSU1Fibroblast growth factor receptor 1/0.449
1ouy094Mitogen-activated protein kinase 14/0.449
1tbbROLcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.449
1tduCB3Thymidylate synthase/0.449
2zl9VDAVitamin D3 receptor/0.449
3h3r14HCollagen type IV alpha-3-binding protein/0.449
3irn1CYBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.449
3jw5TOPDihydrofolate reductase/0.449
3jwcEKBDihydrofolate reductase/0.449
3nrrD16Bifunctional dihydrofolate reductase-thymidylate synthase/0.449
4elg52JDihydrofolate reductase/0.449
1mkdZARcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.448
1q5dEPBEpothilone C/D epoxidase1.140.448
3dfrMTXDihydrofolate reductase1.5.1.30.448
3fmh533Mitogen-activated protein kinase 14/0.448
3qly55VUncharacterized protein/0.448
3vt7VDXVitamin D3 receptor/0.448
4feu537Aminoglycoside 3'-phosphotransferase AphA1-IAB/0.448
4kaoKAOFocal adhesion kinase 12.7.10.20.448
4kbn25UDihydrofolate reductase1.5.1.30.448
5c6cCMPcGMP-dependent protein kinase 22.7.11.120.448
1n8wCOAMalate synthase G/0.447
1oj4CDM4-diphosphocytidyl-2-C-methyl-D-erythritol kinase2.7.1.1480.447
1tlcF89Thymidylate synthase/0.447
2w9gTOPDihydrofolate reductase1.5.1.30.447
2zb1GK4Mitogen-activated protein kinase 14/0.447
3q0gBCOProbable enoyl-CoA hydratase echA84.2.1.170.447
4bgiI4IEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.447
4j6dTESCytochrome P450 monooxygenase/0.447
4jv81M1Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta/0.447
3rfmCFFAdenosine receptor A2a/0.447
1l2jETCEstrogen receptor beta/0.446
1t9b1CSAcetolactate synthase catalytic subunit, mitochondrial2.2.1.60.446
1tl1H18Gag-Pol polyprotein2.7.7.490.446
1y60H4M5,6,7,8-tetrahydromethanopterin hydro-lyase4.2.1.1470.446
2i4zDRHPeroxisome proliferator-activated receptor gamma/0.446
3h3sH15Collagen type IV alpha-3-binding protein/0.446
3l70JZVCytochrome b/0.446
3ppkFNISerine/threonine-protein kinase B-raf2.7.11.10.446
3t5iSER_SER_CMT_FARRetinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta/0.446
3vf60H6Glucokinase2.7.1.20.446
3x065GPPhosphatidylinositol 5-phosphate 4-kinase type-2 beta2.7.1.1490.446
3x2fNAIAdenosylhomocysteinase/0.446
4klrCHDFerrochelatase, mitochondrial4.99.1.10.446
4muw2F4cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.446
5iua6DXAdenosine receptor A2a/0.446
2p15EZTEstrogen receptor/0.445
2uxoTACHTH-type transcriptional regulator TtgR/0.445
3e5aVX6Aurora kinase A2.7.11.10.445
3eg5GNPCell division control protein 42 homolog/0.445
3qlxQLRUncharacterized protein/0.445
4aqlTXCGuanine deaminase3.5.4.30.445
4fgh0U6Dihydrofolate reductase1.5.1.30.445
5i2hAGIO-methyltransferase family 2/0.445
3emlZMAAdenosine receptor A2a/0.445
1ejiTHFSerine hydroxymethyltransferase, cytosolic/0.444
1ly3COGDihydrofolate reductase1.5.1.30.444
2prh238Dihydroorotate dehydrogenase (quinone), mitochondrial1.3.5.20.444
2uxiG50HTH-type transcriptional regulator TtgR/0.444
3cth319Hepatocyte growth factor receptor2.7.10.10.444
3d74NBBPheromone-binding protein ASP1/0.444
3g4gD71cAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.444
3gwfFADCyclohexanone monooxygenase/0.444
3kjsDQ1Bifunctional dihydrofolate reductase-thymidylate synthase/0.444
3qlzQLZUncharacterized protein/0.444
3srqQ19Dihydrofolate reductase1.5.1.30.444
3uzwNAP3-oxo-5-beta-steroid 4-dehydrogenase/0.444
4a4l939Serine/threonine-protein kinase PLK12.7.11.210.444
4bbxLKFcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.444
4i6f1C7Serine/threonine-protein kinase PLK22.7.11.210.444
4iaq2GM5-hydroxytryptamine receptor 1B/0.444
4y6nUPGGlucosyl-3-phosphoglycerate synthase2.4.1.2660.444
3reyXACAdenosine receptor A2a/0.444
1cbrREACellular retinoic acid-binding protein 1/0.443
1iepSTITyrosine-protein kinase ABL12.7.10.20.443
1pkfEPDEpothilone C/D epoxidase1.140.443
2c9ePIDPeridinin-chlorophyll a protein, high-salt form/0.443
2e9aB28Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific)2.5.1.310.443
3ar7TG1Sarcoplasmic/endoplasmic reticulum calcium ATPase 13.6.3.80.443
3ds6A17Mitogen-activated protein kinase 14/0.443
3fkoFKOMitogen-activated protein kinase 14/0.443
3fywXCFDihydrofolate reductase1.5.1.30.443
3htjETEbrA repressor/0.443
3oct1N1Tyrosine-protein kinase BTK2.7.10.20.443
3td8D2RDihydrofolate reductase1.5.1.30.443
3uwlFOZThymidylate synthase/0.443
3vo30KFVascular endothelial growth factor receptor 22.7.10.10.443
4a87NARMajor pollen allergen Bet v 1-A/0.443
4bewCZASarcoplasmic/endoplasmic reticulum calcium ATPase 13.6.3.80.443
4ec3RENReticuline oxidase1.21.3.30.443
4l17DNQGlutamate receptor 2/0.443
4nmcFADBifunctional protein PutA/0.443
1ia4TQ6Dihydrofolate reductase1.5.1.30.442
1tkzH16Gag-Pol polyprotein2.7.7.490.442
3abaFLICytochrome P450/0.442
3ar4TG1Sarcoplasmic/endoplasmic reticulum calcium ATPase 13.6.3.80.442
3frdDHFDihydrofolate reductase1.5.1.30.442
3hbfMYCFlavonoid 3-O-glucosyltransferase2.4.10.442
3qbwADPAnhydro-N-acetylmuramic acid kinase/0.442
3qj5022Alcohol dehydrogenase class-31.1.1.10.442
3sruQ26Dihydrofolate reductase1.5.1.30.442
4eevL1XHepatocyte growth factor receptor2.7.10.10.442
4eyjN61Mitogen-activated protein kinase 132.7.11.240.442
4fhf0TTSpore photoproduct lyase/0.442
1d3hA26Dihydroorotate dehydrogenase (quinone), mitochondrial1.3.5.20.441
2cl5BIECatechol O-methyltransferase2.1.1.60.441
2iltNN1Corticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.441
3fmmXI2Mitogen-activated protein kinase 14/0.441
3gytDL4Nuclear hormone receptor of the steroid/thyroid hormone receptors superfamily/0.441
3nx4NAPPutative oxidoreductase/0.441
3saz043Malate synthase G/0.441
3vjcZGASqualene synthase2.5.1.210.441
3vt3VDXVitamin D3 receptor/0.441
3wsbRWZFarnesyltransferase, putative/0.441
3znqSS8D-amino-acid oxidase1.4.3.30.441
4a322CDGlycylpeptide N-tetradecanoyltransferase/0.441
4at0FADPossible succinate dehydrogenase/0.441
4elb34SDihydrofolate reductase/0.441
1ex75GPGuanylate kinase2.7.4.80.440
1vj3TABDihydrofolate reductase1.5.1.30.440
1zzlTZYMitogen-activated protein kinase 14/0.440
3e92G6AMitogen-activated protein kinase 14/0.440
3fhxPXLPyridoxal kinase2.7.1.350.440
3ozd4CTS-methyl-5'-thioadenosine phosphorylase/0.440
3vspEK8Peroxisome proliferator-activated receptor gamma/0.440
3vtdTKDVitamin D3 receptor/0.440
3x04GNPPhosphatidylinositol 5-phosphate 4-kinase type-2 beta2.7.1.1490.440
4ele31IDihydrofolate reductase/0.440
4h9614QDihydrofolate reductase1.5.1.30.440
4pd6URINucleoside permease/0.440
5uviZMAAdenosine receptor A2a/0.440
5k2dZMAAdenosine receptor A2a/0.440