Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1w0kADPATP synthase subunit alpha, mitochondrial

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1w0kADPATP synthase subunit alpha, mitochondrial/1.000
1w0kADPATP synthase subunit beta, mitochondrial3.6.3.141.000
1bmfANPATP synthase subunit alpha, mitochondrial/0.582
1bmfANPATP synthase subunit beta, mitochondrial3.6.3.140.582
1h8hATPATP synthase subunit alpha, mitochondrial/0.571
1h8hATPATP synthase subunit beta, mitochondrial3.6.3.140.571
1e1qANPATP synthase subunit alpha, mitochondrial/0.570
1e1qANPATP synthase subunit beta, mitochondrial3.6.3.140.570
1e79ATPATP synthase subunit alpha, mitochondrial/0.561
1e79ATPATP synthase subunit beta, mitochondrial3.6.3.140.561
2v7qATPATP synthase subunit alpha, mitochondrial/0.547
2v7qATPATP synthase subunit beta, mitochondrial3.6.3.140.547
3ziaATPATP synthase subunit alpha, mitochondrial/0.502
2ck3ANPATP synthase subunit alpha, mitochondrial/0.499
2ck3ANPATP synthase subunit beta, mitochondrial3.6.3.140.499
4asuADPATP synthase subunit alpha, mitochondrial/0.486
1ohhANPATP synthase subunit alpha, mitochondrial/0.478
1ohhANPATP synthase subunit beta, mitochondrial3.6.3.140.478
2hldANPATP synthase subunit alpha, mitochondrial/0.473
2hldANPATP synthase subunit beta, mitochondrial3.6.3.140.473
3oeeANPATP synthase subunit alpha, mitochondrial/0.456
3oeeANPATP synthase subunit beta, mitochondrial3.6.3.140.456