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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1vyrFMNPentaerythritol tetranitrate reductase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1vyrFMNPentaerythritol tetranitrate reductase/1.000
1h50FMNPentaerythritol tetranitrate reductase/0.660
3p8iFMNPentaerythritol tetranitrate reductase/0.633
3p74FMNPentaerythritol tetranitrate reductase/0.621
2abbFMNPentaerythritol tetranitrate reductase/0.587
3f03FMNPentaerythritol tetranitrate reductase/0.573
3p82FMNPentaerythritol tetranitrate reductase/0.566
3p67FMNPentaerythritol tetranitrate reductase/0.557
3p62FMNPentaerythritol tetranitrate reductase/0.556
3p8jFMNPentaerythritol tetranitrate reductase/0.550
1h63FMNPentaerythritol tetranitrate reductase/0.543
1h51FMNPentaerythritol tetranitrate reductase/0.526
3p84FMNPentaerythritol tetranitrate reductase/0.525
4jicFMNGTN Reductase/0.474
1icqFMN12-oxophytodienoate reductase 11.3.1.420.470
1icsFMN12-oxophytodienoate reductase 11.3.1.420.469
1icpFMN12-oxophytodienoate reductase 11.3.1.420.466
3hgrFMN12-oxophytodienoate reductase 11.3.1.420.465
1bwlFMNNADPH dehydrogenase 11.6.99.10.449
1vjiFMN12-oxophytodienoate reductase 11.3.1.420.444