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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1vjiFMN12-oxophytodienoate reductase 11.3.1.42

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1vjiFMN12-oxophytodienoate reductase 11.3.1.421.000
2q3rFMN12-oxophytodienoate reductase 11.3.1.420.624
1icqFMN12-oxophytodienoate reductase 11.3.1.420.610
4tmbFMNOld yellow enzyme/0.597
1icpFMN12-oxophytodienoate reductase 11.3.1.420.592
1icsFMN12-oxophytodienoate reductase 11.3.1.420.588
3hgrFMN12-oxophytodienoate reductase 11.3.1.420.587
1h50FMNPentaerythritol tetranitrate reductase/0.571
4rnvFMNNADPH dehydrogenase 11.6.99.10.568
2abbFMNPentaerythritol tetranitrate reductase/0.560
3f03FMNPentaerythritol tetranitrate reductase/0.559
1vyrFMNPentaerythritol tetranitrate reductase/0.554
3p74FMNPentaerythritol tetranitrate reductase/0.550
3hgoFMN12-oxophytodienoate reductase 31.3.1.420.546
4jicFMNGTN Reductase/0.540
3hgsFMN12-oxophytodienoate reductase 31.3.1.420.539
1h63FMNPentaerythritol tetranitrate reductase/0.536
2hs6FMN12-oxophytodienoate reductase 31.3.1.420.529
3p82FMNPentaerythritol tetranitrate reductase/0.529
4rnwFMNNADPH dehydrogenase 11.6.99.10.529
1q45FMN12-oxophytodienoate reductase 31.3.1.420.524
4m5pFMNNADPH dehydrogenase/0.524
2hs8FMN12-oxophytodienoate reductase 31.3.1.420.520
1bwlFMNNADPH dehydrogenase 11.6.99.10.508
3gkaFMNN-ethylmaleimide reductase/0.506
3tjlFMNNADPH dehydrogenase/0.504
1oycFMNNADPH dehydrogenase 11.6.99.10.503
4rnuFMNNADPH dehydrogenase 11.6.99.10.503
4df2FMNNADPH dehydrogenase/0.500
4e2bFMNDehydrogenase/0.496
3p67FMNPentaerythritol tetranitrate reductase/0.493
1bwkFMNNADPH dehydrogenase 11.6.99.10.491
4e2dFMNDehydrogenase/0.487
4tmcFMNOld yellow enzyme/0.486
4awtFMNNADH:flavin oxidoreductase Sye1/0.485
2gouFMNNADH:flavin oxidoreductase Sye1/0.479
3p84FMNPentaerythritol tetranitrate reductase/0.476
4a3uFMNNADH:flavin oxidoreductase/NADH oxidase/0.475
4rnxFMNNADPH dehydrogenase 11.6.99.10.472
3p8iFMNPentaerythritol tetranitrate reductase/0.471
1h51FMNPentaerythritol tetranitrate reductase/0.463
1oyaFMNNADPH dehydrogenase 11.6.99.10.461
3p8jFMNPentaerythritol tetranitrate reductase/0.455
2gqaFMNNADH:flavin oxidoreductase Sye1/0.454
4b5nFMNNAD(P)H:flavin oxidoreductase Sye4/0.454
2q3oFMN12-oxophytodienoate reductase 31.3.1.420.450
4qaiFMNNADPH dehydrogenase/0.445
3atyFMNProstaglandin F2a synthase/0.443