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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1vebI05cAMP-dependent protein kinase catalytic subunit alpha2.7.11.11

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1vebI05cAMP-dependent protein kinase catalytic subunit alpha2.7.11.111.000
1sveI01cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.673
3zo1SIJcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.603
1svgI04cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.602
1svhI08cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.592
2vo0M03cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.586
3dndLL2cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.586
1xh9R69cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.583
2vo3M04cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.581
2vnwM01cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.572
1xh7R96cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.566
1ydtIQBcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.566
1xh6R94cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.563
2vo6M05cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.563
1q8wM77cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.557
1xh5R68cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.556
1q8tY27cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.554
1q8uH52cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.549
1xh4R69cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.547
2vo7M05cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.547
2uzuL20cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.544
4axaRKDcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.543
1xh8R55cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.542
2gnlH52cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.541
2uzwSS4cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.541
1ydrIQPcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.537
2f7e2EAcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.537
2oh02PYcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.537
2uw7GVPcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.537
2uw0GVKcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.536
1xhaR68cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.531
2c1bCQPcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.527
2jdsL20cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.527
3zo4QWIcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.527
2uw6GVOcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.525
2jdtI5ScAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.520
2uw5GVNcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.519
2ojf4PYcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.517
2c1aI5ScAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.516
2uztSS3cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.515
2gu8796cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.509
3ow3SMYcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.507
3amaSKEcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.495
2f7z6EAcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.494
1bx6BA1cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.475
2f7x4EAcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.472
2uzvSS5cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.472
1rejB1LcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.470
3vqhIQBcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.468
4yxsEMUcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.468
3l9mL9McAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.466
2uw4L15cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.454
4xw4ANPcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.453
3e8cG96cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.451
3e8eG98cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.444