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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1v7aFRCAdenosine deaminase3.5.4.4

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1v7aFRCAdenosine deaminase3.5.4.41.000
1ndzFR5Adenosine deaminase3.5.4.40.707
2z7gEH9Adenosine deaminase3.5.4.40.669
1umlFR4Adenosine deaminase3.5.4.40.656
1o5rFR9Adenosine deaminase3.5.4.40.632
1wxyFRKAdenosine deaminase3.5.4.40.602
1ndyFR3Adenosine deaminase3.5.4.40.594
1v79FR7Adenosine deaminase3.5.4.40.572
1qxlFR8Adenosine deaminase3.5.4.40.541