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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1v0jFADUDP-galactopyranose mutase5.4.99.9

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1v0jFADUDP-galactopyranose mutase5.4.99.91.000
4mo2FDAUDP-galactopyranose mutase/0.540
4rpjFADUDP-galactopyranose mutase5.4.99.90.533
2bi7FADUDP-galactopyranose mutase5.4.99.90.530
4mo2FADUDP-galactopyranose mutase/0.530
1wamFADUDP-galactopyranose mutase5.4.99.90.524
3he3FADUDP-galactopyranose mutase/0.519
3intFDAUDP-galactopyranose mutase5.4.99.90.512
3mj4FADUDP-galactopyranose mutase/0.511
3hdyFDAUDP-galactopyranose mutase/0.496