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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1uioHPRAdenosine deaminase3.5.4.4

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1uioHPRAdenosine deaminase3.5.4.41.000
1fkwPURAdenosine deaminase3.5.4.40.564
1a4lDCFAdenosine deaminase3.5.4.40.554
2adaHPRAdenosine deaminase3.5.4.40.508
1fkxPRHAdenosine deaminase3.5.4.40.496
1v7aFRCAdenosine deaminase3.5.4.40.467
4g1z0VPVitamin D3 receptor A/0.458
1ndzFR5Adenosine deaminase3.5.4.40.451
1qxlFR8Adenosine deaminase3.5.4.40.451
1umlFR4Adenosine deaminase3.5.4.40.445
1o5rFR9Adenosine deaminase3.5.4.40.441