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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1uhhCZPAequorin-2

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1uhhCZPAequorin-2/1.000
1ej3CZHAequorin-2/0.614
1uhjCZBAequorin-2/0.611
4n1fCZHObelin/0.580
4nqgCZHMitrocomin/0.580
1qv1CZHObelin/0.579
1el4CTZObelin/0.575
1jf0CZHObelin/0.565
1jf2CZHObelin/0.558
1qv0CZHObelin/0.547
1s36CEIObelin/0.506
4mrxCZHObelin/0.494
1q0zAKAAclacinomycin methylesterase RdmC3.1.1.950.463
3c1oNAPEugenol synthase/0.441