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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1u7tTDT3-hydroxyacyl-CoA dehydrogenase type-21.1.1.35

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1u7tTDT3-hydroxyacyl-CoA dehydrogenase type-21.1.1.351.000
1e6wNAD3-hydroxyacyl-CoA dehydrogenase type-21.1.1.350.542
1e3wNAD3-hydroxyacyl-CoA dehydrogenase type-21.1.1.350.539
2wsbNADGalactitol dehydrogenase/0.490
5jlaNADPutative short-chain dehydrogenase/reductase/0.486
2wdzNADGalactitol dehydrogenase/0.481
3sx2NADUncharacterized protein/0.478
4nbuNAI3-oxoacyl-(Acyl-carrier-protein) reductase/0.478
2dknNAI3-alpha-hydroxysteroid dehydrogenase/0.475
3uxyNADShort-chain dehydrogenase/reductase SDR/0.468
1hdcCBO3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase1.1.1.530.459
5jsfNAD17-beta-hydroxysteroid dehydrogenase 141.1.10.459
1w4zNAPPutative ketoacyl reductase1.3.10.458
4fw8NAI3-oxoacyl-(Acyl-carrier-protein) reductase/0.457
5js6NAD17-beta-hydroxysteroid dehydrogenase 141.1.10.455
4c7kNAPCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.449
5jy1NADPutative short-chain dehydrogenase/reductase/0.449
3sjuNDPKeto reductase/0.448
3lqfNADGalactitol dehydrogenase/0.446
1iy8NADLevodione reductase/0.445
4is3NAD3alpha-hydroxy bile acid-CoA-ester 3-dehydrogenase 21.17.98.10.443
1e3sNAD3-hydroxyacyl-CoA dehydrogenase type-21.1.1.350.440
1u7tNAD3-hydroxyacyl-CoA dehydrogenase type-21.1.1.350.440
4bmsNAPAlclohol dehydrogenase/short-chain dehydrogenase/0.440