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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1tvrTB9Gag-Pol polyprotein2.7.7.49

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1tvrTB9Gag-Pol polyprotein2.7.7.491.000
1hnvTBOGag-Pol polyprotein2.7.7.490.553
3is9AC7Gag-Pol polyprotein2.7.7.490.545
3ffi3OBGag-Pol polyprotein2.7.7.490.539
3irxUDRGag-Pol polyprotein2.7.7.490.535
4i7fNVEGag-Pol polyprotein2.7.7.490.526
1hpzAAPGag-Pol polyprotein2.7.7.490.515
4i2q1BTGag-Pol polyprotein2.7.7.490.515
3i0rRT3Gag-Pol polyprotein2.7.7.490.507
2ban357Gag-Pol polyprotein2.7.7.490.501
3dleGFAGag-Pol polyprotein2.7.7.490.498
1jlaTNKGag-Pol polyprotein2.7.7.490.490
3e01PZ2Gag-Pol polyprotein2.7.7.490.490
1s9eADBGag-Pol polyprotein2.7.7.490.483
3nbpJGZGag-Pol polyprotein2.7.7.490.483
1rt2TNKGag-Pol polyprotein2.7.7.490.481
2ze2T27Gag-Pol polyprotein2.7.7.490.479
1hquHBYGag-Pol polyprotein2.7.7.490.467
3lamKRPGag-Pol polyprotein2.7.7.490.467
1klmSPPGag-Pol polyprotein2.7.7.490.466
3i0sRT7Gag-Pol polyprotein2.7.7.490.464
3m8qDJZGag-Pol polyprotein2.7.7.490.464
3dmjGWEPol protein/0.459
4mfb29TGag-Pol polyprotein2.7.7.490.455
1revTB9Gag-Pol polyprotein2.7.7.490.453
3di6PDZGag-Pol polyprotein2.7.7.490.450
1rt5UC2Gag-Pol polyprotein2.7.7.490.448
2ic3HBYGag-Pol polyprotein2.7.7.490.444
4h4o506Gag-Pol polyprotein2.7.7.490.443
3sgx0FWDitrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific)2.5.1.310.442
1rt1MKCGag-Pol polyprotein2.7.7.490.441
1rt4UC1Gag-Pol polyprotein2.7.7.490.440