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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1tktH12Gag-Pol polyprotein2.7.7.49

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1tktH12Gag-Pol polyprotein2.7.7.491.000
1tl1H18Gag-Pol polyprotein2.7.7.490.704
1tl3H20Gag-Pol polyprotein2.7.7.490.685
1tkzH16Gag-Pol polyprotein2.7.7.490.656
1c1bGCAGag-Pol polyprotein2.7.7.490.614
1revTB9Gag-Pol polyprotein2.7.7.490.597
1s1wUC1Gag-Pol polyprotein2.7.7.490.571
3ffi3OBGag-Pol polyprotein2.7.7.490.560
3qlhT27Gag-Pol polyprotein2.7.7.490.560
2zd1T27Gag-Pol polyprotein2.7.7.490.558
1rt4UC1Gag-Pol polyprotein2.7.7.490.551
2opqHBQGag-Pol polyprotein2.7.7.490.550
4i2pG73Gag-Pol polyprotein2.7.7.490.547
3is9AC7Gag-Pol polyprotein2.7.7.490.546
2hnzPC0Gag-Pol polyprotein2.7.7.490.539
3i0rRT3Gag-Pol polyprotein2.7.7.490.538
1vruAAPGag-Pol polyprotein2.7.7.490.533
4id5T27Gag-Pol polyprotein2.7.7.490.533
4ifvT27Gag-Pol polyprotein2.7.7.490.532
2ze2T27Gag-Pol polyprotein2.7.7.490.530
4g1qT27Gag-Pol polyprotein2.7.7.490.519
1ikwEFZGag-Pol polyprotein2.7.7.490.518
4i7fNVEGag-Pol polyprotein2.7.7.490.510
3irxUDRGag-Pol polyprotein2.7.7.490.509
1hnvTBOGag-Pol polyprotein2.7.7.490.504
3nbpJGZGag-Pol polyprotein2.7.7.490.504
1ikxPNUGag-Pol polyprotein2.7.7.490.501
2hndNVPGag-Pol polyprotein2.7.7.490.499
1s6qTPBGag-Pol polyprotein2.7.7.490.496
4ko0JLJGag-Pol polyprotein2.7.7.490.496
1rt1MKCGag-Pol polyprotein2.7.7.490.495
1hpzAAPGag-Pol polyprotein2.7.7.490.494
2vg7NNIGag-Pol polyprotein2.7.7.490.492
3dleGFAGag-Pol polyprotein2.7.7.490.491
1hquHBYGag-Pol polyprotein2.7.7.490.489
3meeT27Gag-Pol polyprotein2.7.7.490.489
1rt2TNKGag-Pol polyprotein2.7.7.490.486
1rt7UC4Gag-Pol polyprotein2.7.7.490.485
3dmjGWEPol protein/0.483
3lalKRVGag-Pol polyprotein2.7.7.490.482
3m8qDJZGag-Pol polyprotein2.7.7.490.480
3med65BGag-Pol polyprotein2.7.7.490.480
1eetBFUGag-Pol polyprotein2.7.7.490.479
1fk9EFZGag-Pol polyprotein2.7.7.490.479
2rf2MRXGag-Pol polyprotein2.7.7.490.479
3mec65BGag-Pol polyprotein2.7.7.490.479
4kko1REGag-Pol polyprotein2.7.7.490.479
3c6uM22Gag-Pol polyprotein2.7.7.490.477
1rt5UC2Gag-Pol polyprotein2.7.7.490.476
2opsHBQGag-Pol polyprotein2.7.7.490.476
3megT27Gag-Pol polyprotein2.7.7.490.475
1jlcFTCGag-Pol polyprotein2.7.7.490.474
1klmSPPGag-Pol polyprotein2.7.7.490.473
3t1a5MAGag-Pol polyprotein2.7.7.490.471
1ep4S11Gag-Pol polyprotein2.7.7.490.470
1s9eADBGag-Pol polyprotein2.7.7.490.469
3lamKRPGag-Pol polyprotein2.7.7.490.467
1ikyMSDGag-Pol polyprotein2.7.7.490.466
4i2q1BTGag-Pol polyprotein2.7.7.490.466
1ikvEFZGag-Pol polyprotein2.7.7.490.464
4rw6494Gag-Pol polyprotein2.7.7.490.464
4ig3T27Gag-Pol polyprotein2.7.7.490.463
2ban357Gag-Pol polyprotein2.7.7.490.462
3m8p65BGag-Pol polyprotein2.7.7.490.462
4mfb29TGag-Pol polyprotein2.7.7.490.459
1s1tUC1Gag-Pol polyprotein2.7.7.490.457
1tkxGWBGag-Pol polyprotein2.7.7.490.452
2vg5NNCGag-Pol polyprotein2.7.7.490.452
1jlgUC1Gag-Pol polyprotein2.7.7.490.451
1hniAAAGag-Pol polyprotein2.7.7.490.449
2oppHBQGag-Pol polyprotein2.7.7.490.448
4h4m494Gag-Pol polyprotein2.7.7.490.446
3i0sRT7Gag-Pol polyprotein2.7.7.490.444