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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1tj0FADBifunctional protein PutA1.5.5.2

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1tj0FADBifunctional protein PutA1.5.5.21.000
4o8aFADBifunctional protein PutA1.2.1.880.828
1tj2FADBifunctional protein PutA1.5.5.20.671
3e2sFADBifunctional protein PutA1.5.5.20.663
1tj1FADBifunctional protein PutA1.5.5.20.646
2fzmFADBifunctional protein PutA1.5.5.20.594
3hazFADBifunctional protein PutA/0.570
4q71FADBifunctional protein PutA/0.509
4q73FADBifunctional protein PutA/0.493
4q72FADBifunctional protein PutA/0.486
2fznFADBifunctional protein PutA1.5.5.20.480