sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Cavities are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 1til | ATP | Anti-sigma F factor |
| PDB ID | HET | Uniprot Name | EC Number | Cavity Similarity |
Align |
|---|---|---|---|---|---|
| 1til | ATP | Anti-sigma F factor | / | 1.000 | |
| 1thn | ADP | Anti-sigma F factor | / | 0.559 | |
| 1l0o | ADP | Anti-sigma F factor | / | 0.536 | |
| 3d2r | ADP | [Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 4, mitochondrial | 2.7.11.2 | 0.494 | |
| 2zkj | ADP | [Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 4, mitochondrial | 2.7.11.2 | 0.490 | |
| 1gjv | AGS | [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, mitochondrial | 2.7.11.4 | 0.477 | |
| 1i59 | ANP | Chemotaxis protein CheA | 2.7.13.3 | 0.475 | |
| 2ejz | SAH | Diphthine synthase | / | 0.472 | |
| 2e0a | ANP | [Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 4, mitochondrial | 2.7.11.2 | 0.466 | |
| 3bxo | UPP | dTDP-3-amino-3,4,6-trideoxy-alpha-D-glucopyranose | / | 0.458 | |
| 2g8y | NAD | Hydroxycarboxylate dehydrogenase B | / | 0.456 | |
| 3otw | COA | Phosphopantetheine adenylyltransferase | / | 0.454 | |
| 2gjl | FMN | Nitronate monooxygenase | 1.13.12.16 | 0.453 | |
| 2j9f | THV | 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial | 1.2.4.4 | 0.453 | |
| 2j9f | THV | 2-oxoisovalerate dehydrogenase subunit beta, mitochondrial | 1.2.4.4 | 0.453 | |
| 1xe6 | 5FP | Plasmepsin-2 | 3.4.23.39 | 0.449 | |
| 2ele | SAH | Diphthine synthase | / | 0.447 | |
| 4wud | ANP | DNA gyrase subunit B | / | 0.447 | |
| 4biw | ANP | Sensor histidine kinase CpxA | / | 0.446 | |
| 2xlr | FAD | Putative flavin-containing monooxygenase | / | 0.444 | |
| 3c1o | NAP | Eugenol synthase | / | 0.444 | |
| 3h3r | 14H | Collagen type IV alpha-3-binding protein | / | 0.444 | |
| 1i5r | HYC | Estradiol 17-beta-dehydrogenase 1 | 1.1.1.62 | 0.443 | |
| 1c7o | PPG | Hemolysin | / | 0.441 | |
| 2a1h | GBN | Branched-chain-amino-acid aminotransferase, mitochondrial | 2.6.1.42 | 0.441 | |
| 5dp2 | NAP | CurF | / | 0.441 | |
| 1ve3 | SAM | Uncharacterized protein | / | 0.440 | |
| 2p6k | SAH | Diphthine synthase | / | 0.440 |