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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1ryiFADGlycine oxidase1.4.3.19

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1ryiFADGlycine oxidase1.4.3.191.000
1ng3FADGlycine oxidase1.4.3.190.582
1ng4FADGlycine oxidase1.4.3.190.572
3if9FADGlycine oxidase1.4.3.190.557
2du8FADD-amino-acid oxidase1.4.3.30.538
2e48FADD-amino-acid oxidase1.4.3.30.498
1kifFADD-amino-acid oxidase1.4.3.30.496
4yshFADGlycine oxidase/0.489
2rgoFADAlpha-Glycerophosphate Oxidase/0.463
3znpFADD-amino-acid oxidase1.4.3.30.463
3axbFADPutative oxidoreductase/0.452