scPDB - Distribution of Cavity Similarity values of 1rx8 entry / Site 1

Distribution of Cavity similarities measured by Shaper

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Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
1rx8	FOL	Dihydrofolate reductase	1.5.1.3

Complex with similar cavities

PDB ID	HET	Uniprot Name	EC Number	Cavity Similarity
1rx8	FOL	Dihydrofolate reductase	1.5.1.3	1.000
1rx8	NAP	Dihydrofolate reductase	1.5.1.3	0.696
1rx1	NAP	Dihydrofolate reductase	1.5.1.3	0.620
1rx7	FOL	Dihydrofolate reductase	1.5.1.3	0.573
2h2q	NAP	Bifunctional dihydrofolate reductase-thymidylate synthase	1.5.1.3	0.532
5ecc	NAP	Dehydrofolate reductase type I	/	0.532
1rx5	DDF	Dihydrofolate reductase	1.5.1.3	0.531
1dra	MTX	Dihydrofolate reductase	1.5.1.3	0.527
3qlr	NDP	Dihydrofolate reductase	1.5.1.3	0.527
1dyh	DZF	Dihydrofolate reductase	1.5.1.3	0.526
1ia4	TQ6	Dihydrofolate reductase	1.5.1.3	0.525
2cig	1DG	Dihydrofolate reductase	1.5.1.3	0.523
3clb	NAP	Bifunctional dihydrofolate reductase-thymidylate synthase	1.5.1.3	0.523
2drc	MTX	Dihydrofolate reductase	1.5.1.3	0.522
3och	2MX	Dihydrofolate reductase	1.5.1.3	0.522
1dg8	NDP	Dihydrofolate reductase	1.5.1.3	0.515
1dyj	DDF	Dihydrofolate reductase	1.5.1.3	0.515
3inv	NDP	Bifunctional dihydrofolate reductase-thymidylate synthase	1.5.1.3	0.515
3kjs	NAP	Bifunctional dihydrofolate reductase-thymidylate synthase	/	0.515
1dr3	TAP	Dihydrofolate reductase	1.5.1.3	0.514
1tdr	MTX	Dihydrofolate reductase	1.5.1.3	0.514
3qls	NDP	Dihydrofolate reductase	1.5.1.3	0.514
4dfr	MTX	Dihydrofolate reductase	1.5.1.3	0.514
1ai9	NDP	Dihydrofolate reductase	1.5.1.3	0.512
4x5i	FOL	Dihydrofolate reductase	1.5.1.3	0.512
1dr3	HBI	Dihydrofolate reductase	1.5.1.3	0.511
3oaf	OAG	Dihydrofolate reductase	1.5.1.3	0.510
4ele	31I	Dihydrofolate reductase	/	0.510
1jol	FFO	Dihydrofolate reductase	1.5.1.3	0.508
1ia3	TQ5	Dihydrofolate reductase	1.5.1.3	0.506
1rb2	FOL	Dihydrofolate reductase	1.5.1.3	0.506
1diu	BDM	Dihydrofolate reductase	1.5.1.3	0.505
1ddr	MTX	Dihydrofolate reductase	1.5.1.3	0.504
1dds	MTX	Dihydrofolate reductase	1.5.1.3	0.503
1dyi	FOL	Dihydrofolate reductase	1.5.1.3	0.503
1dr2	TAP	Dihydrofolate reductase	1.5.1.3	0.502
1dr5	NAP	Dihydrofolate reductase	1.5.1.3	0.501
2w9h	TOP	Dihydrofolate reductase	1.5.1.3	0.500
3d84	NDP	Dihydrofolate reductase	1.5.1.3	0.497
1rx6	DDF	Dihydrofolate reductase	1.5.1.3	0.496
3irm	1CY	Bifunctional dihydrofolate reductase-thymidylate synthase	1.5.1.3	0.495
1re7	FOL	Dihydrofolate reductase	1.5.1.3	0.492
3dg8	NDP	Bifunctional dihydrofolate reductase-thymidylate synthase	1.5.1.3	0.491
1dhj	MTX	Dihydrofolate reductase	1.5.1.3	0.490
4cd2	FOL	Dihydrofolate reductase	1.5.1.3	0.489
4g95	OAG	Dihydrofolate reductase	1.5.1.3	0.488
1rf7	DHF	Dihydrofolate reductase	1.5.1.3	0.487
4x5j	FOL	Dihydrofolate reductase	1.5.1.3	0.487
1drb	MTX	Dihydrofolate reductase	1.5.1.3	0.486
1rb3	MTX	Dihydrofolate reductase	1.5.1.3	0.486
5hi6	MTX	Dihydrofolate reductase	/	0.486
3nxx	NDP	Dihydrofolate reductase	1.5.1.3	0.484
4l0q	NAD	Alcohol dehydrogenase class-3	/	0.483
3dga	NDP	Bifunctional dihydrofolate reductase-thymidylate synthase	1.5.1.3	0.479
5ccc	DDF	Dihydrofolate reductase	1.5.1.3	0.478
1m78	NDP	Dihydrofolate reductase	1.5.1.3	0.477
4kl9	NDP	Dihydrofolate reductase	1.5.1.3	0.477
1drh	NAP	Dihydrofolate reductase	1.5.1.3	0.476
1ia1	NDP	Dihydrofolate reductase	1.5.1.3	0.472
3kjr	NAP	Bifunctional dihydrofolate reductase-thymidylate synthase	/	0.470
4gl4	NAI	Alcohol dehydrogenase class-3	/	0.469
1dhi	MTX	Dihydrofolate reductase	1.5.1.3	0.468
3s7a	684	Dihydrofolate reductase	1.5.1.3	0.468
3uko	NAD	Alcohol dehydrogenase class-3	/	0.468
1ra3	MTX	Dihydrofolate reductase	1.5.1.3	0.467
1ra8	FOL	Dihydrofolate reductase	1.5.1.3	0.463
3drc	MTX	Dihydrofolate reductase	1.5.1.3	0.463
1rc4	DDF	Dihydrofolate reductase	1.5.1.3	0.457
3hbb	NAP	Bifunctional dihydrofolate reductase-thymidylate synthase	1.5.1.3	0.457
4dl9	NAD	S-(hydroxymethyl)glutathione dehydrogenase	/	0.456
1ma0	NAD	Alcohol dehydrogenase class-3	1.1.1.1	0.455
1mvs	DTM	Dihydrofolate reductase	1.5.1.3	0.454
2qk8	MTX	Dihydrofolate reductase	/	0.454
3s3v	TOP	Dihydrofolate reductase	1.5.1.3	0.454
2cf6	NAP	Cinnamyl alcohol dehydrogenase 5	1.1.1.195	0.453
4x5h	FOL	Dihydrofolate reductase	1.5.1.3	0.452
1pd9	CO4	Dihydrofolate reductase	1.5.1.3	0.451
4ej1	FOL	Dihydrofolate reductase	1.5.1.3	0.451
4elf	35I	Dihydrofolate reductase	/	0.451
1rx4	DDF	Dihydrofolate reductase	1.5.1.3	0.450
1teh	NAD	Alcohol dehydrogenase class-3	1.1.1.1	0.450
4kne	1CY	Dihydrofolate reductase	1.5.1.3	0.448
4anx	534	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform	2.7.1.153	0.447
1s3v	TQD	Dihydrofolate reductase	1.5.1.3	0.446
1dis	BDM	Dihydrofolate reductase	1.5.1.3	0.444
1s3u	TQD	Dihydrofolate reductase	1.5.1.3	0.444
3eig	MTX	Dihydrofolate reductase	1.5.1.3	0.442