sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Distribution of Cavity similarities measured by Shaper

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Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
1qx4	FAD	NADH-cytochrome b5 reductase 3	1.6.2.2

Complex with similar cavities

PDB ID	HET	Uniprot Name	EC Number	Cavity Similarity	Align
1qx4	FAD	NADH-cytochrome b5 reductase 3	1.6.2.2	1.000
1ndh	FAD	NADH-cytochrome b5 reductase 3	1.6.2.2	0.517
2cnd	FAD	Nitrate reductase [NADH]	1.7.1.1	0.512
1umk	FAD	NADH-cytochrome b5 reductase 3	1.6.2.2	0.509
1i7p	FAD	NADH-cytochrome b5 reductase 3	1.6.2.2	0.498
4uwm	FMN	3,6-diketocamphane 1,6 monooxygenase	1.14.13	0.481
1cnf	FAD	Nitrate reductase [NADH]	1.7.1.1	0.460
3te5	NAI	5'-AMP-activated protein kinase subunit gamma	/	0.452
4bc7	FAD	Alkyldihydroxyacetonephosphate synthase, peroxisomal	2.5.1.26	0.451
2i3g	NAP	N-acetyl-gamma-glutamyl-phosphate reductase	1.2.1.38	0.447
1xe5	5FE	Plasmepsin-2	3.4.23.39	0.441