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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1qh0FADFerredoxin--NADP reductase1.18.1.2

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1qh0FADFerredoxin--NADP reductase1.18.1.21.000
1h85FADFerredoxin--NADP reductase1.18.1.20.889
1bjkFADFerredoxin--NADP reductase1.18.1.20.801
1qgyFADFerredoxin--NADP reductase1.18.1.20.791
1go2FADFerredoxin--NADP reductase1.18.1.20.747
1b2rFADFerredoxin--NADP reductase1.18.1.20.739
1e64FADFerredoxin--NADP reductase1.18.1.20.734
3zbtFADFerredoxin--NADP reductase1.18.1.20.634
4c43FADFerredoxin--NADP reductase1.18.1.20.628
3zc3FADFerredoxin--NADP reductase1.18.1.20.611
2b5oFADFerredoxin--NADP reductase1.18.1.20.603
1e63FADFerredoxin--NADP reductase1.18.1.20.596
1ewyFADFerredoxin--NADP reductase1.18.1.20.595
1fncFDAFerredoxin--NADP reductase, chloroplastic1.18.1.20.589
1fnbFADFerredoxin--NADP reductase, chloroplastic1.18.1.20.588
4af7FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic1.18.1.20.584
1gjrFADFerredoxin--NADP reductase1.18.1.20.582
3w5uFADFerredoxin/0.581
4bprFADFerredoxin--NADP reductase1.18.1.20.579
1queFADFerredoxin--NADP reductase1.18.1.20.577
1ogiFADFerredoxin--NADP reductase1.18.1.20.563
1ogjFADFerredoxin--NADP reductase1.18.1.20.560
1sm4FADFerredoxin--NADP reductase/0.560
1bx1FADFerredoxin--NADP reductase, chloroplastic1.18.1.20.559
3vo2FADFerredoxin--NADP reductase/0.558
4af6FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic1.18.1.20.558
1gr1FADFerredoxin--NADP reductase1.18.1.20.553
2rc6FADFerredoxin--NADP reductase/0.547
1w87FADFerredoxin--NADP reductase1.18.1.20.542
1qgzFADFerredoxin--NADP reductase1.18.1.20.537
1gaqFADFerredoxin/0.535
3qfsFADNADPH--cytochrome P450 reductase/0.531
1amoFADNADPH--cytochrome P450 reductase/0.529
1gawFADFerredoxin/0.528
1e62FADFerredoxin--NADP reductase1.18.1.20.522
3mhpFADFerredoxin--NADP reductase, leaf isozyme, chloroplastic1.18.1.20.522
4yaoFADNADPH--cytochrome P450 reductase/0.521
3fpkFADFerredoxin-NADP reductase/0.518
1fndFADFerredoxin--NADP reductase, chloroplastic1.18.1.20.517
1h42FADFerredoxin--NADP reductase1.18.1.20.517
2xncFADFerredoxin--NADP reductase, leaf isozyme, chloroplastic1.18.1.20.517
1gvhFADFlavohemoprotein/0.510
2ok8FADFerredoxin--NADP reductase, apicoplast/0.505
3qftFADNADPH--cytochrome P450 reductase/0.505
1w35FADFerredoxin--NADP reductase1.18.1.20.501
4uajFADNa(+)-translocating NADH-quinone reductase subunit F/0.495
1tllFADNitric oxide synthase, brain1.14.13.390.491
4y9rFADNADPH--cytochrome P450 reductase/0.488
1fdrFADFerredoxin--NADP reductase1.18.1.20.483
1j9zFADNADPH--cytochrome P450 reductase/0.479
3qe2FADNADPH--cytochrome P450 reductase/0.472
5ah5LSSLeucine--tRNA ligase/0.471
1ja1FADNADPH--cytochrome P450 reductase/0.470
2zevIPEGeranylgeranyl pyrophosphate synthase/0.466
2r6hFADNa(+)-translocating NADH-quinone reductase subunit F/0.463
2bpoFADNADPH--cytochrome P450 reductase/0.462
1f20FADNitric oxide synthase, brain1.14.13.390.460
4bfxZVXPantothenate kinase2.7.1.330.457
2bgiFADNADPH:ferredoxin reductase/0.456
2rc5FADFerredoxin--NADP reductase/0.456
3qfcFADNADPH--cytochrome P450 reductase/0.455
3busSAHDemethylrebeccamycin-D-glucose O-methyltransferase/0.453
1hzzNAPNAD(P) transhydrogenase subunit beta1.6.1.20.452
3e6eDCSAlanine racemase/0.452
4fk8FADFerredoxin--NADP reductase/0.452
3jyoNADQuinate/shikimate dehydrogenase (NAD(+))/0.450
3otwCOAPhosphopantetheine adenylyltransferase/0.450
3jqrFADFerredoxin--NADP reductase, apicoplast/0.448
1a8pFADFerredoxin--NADP reductase/0.447
1r58AO5Methionine aminopeptidase 2/0.447
1bx0FADFerredoxin--NADP reductase, chloroplastic1.18.1.20.444
1cqxFADFlavohemoprotein/0.444
1krhFADBenzoate 1,2-dioxygenase electron transfer component1.18.1.30.444
2vnkFADNADPH:ferredoxin reductase/0.444
4a322CDGlycylpeptide N-tetradecanoyltransferase/0.444
3fsjD7KBenzoylformate decarboxylase4.1.1.70.443
5bu2ADPUncharacterized protein/0.443
2f98NGVAklanonic acid methyl ester cyclase AcmA5.5.1.230.441
2fsvNAPNAD(P) transhydrogenase subunit beta1.6.1.20.440