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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1qf4RPDAdenylosuccinate synthetase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1qf4RPDAdenylosuccinate synthetase/1.000
1qf5RPLAdenylosuccinate synthetase/0.783
1cg1IMOAdenylosuccinate synthetase/0.565
1cg3IMOAdenylosuccinate synthetase/0.564
2gcqDOIAdenylosuccinate synthetase/0.545
1kszPGSAdenylosuccinate synthetase/0.538
1nhtPGSAdenylosuccinate synthetase/0.538
1cg4IMOAdenylosuccinate synthetase/0.533
2dgnDOIAdenylosuccinate synthetase isozyme 1/0.506
1cg0IMOAdenylosuccinate synthetase/0.504
1p9bIMOAdenylosuccinate synthetase/0.503
1lonIMOAdenylosuccinate synthetase isozyme 1/0.498