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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1q66KMBQueuine tRNA-ribosyltransferase2.4.2.29

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1q66KMBQueuine tRNA-ribosyltransferase2.4.2.291.000
3ge7AFQQueuine tRNA-ribosyltransferase2.4.2.290.582
4gg90WWQueuine tRNA-ribosyltransferase2.4.2.290.567
1y5vNE8Queuine tRNA-ribosyltransferase2.4.2.290.566
2bbf344Queuine tRNA-ribosyltransferase2.4.2.290.566
1q65BHBQueuine tRNA-ribosyltransferase2.4.2.290.558
4gh10WXQueuine tRNA-ribosyltransferase2.4.2.290.545
1q4wDQUQueuine tRNA-ribosyltransferase2.4.2.290.543
2z1xPRFQueuine tRNA-ribosyltransferase2.4.2.290.526
1efzPRFQueuine tRNA-ribosyltransferase2.4.2.290.522
1q63AIQQueuine tRNA-ribosyltransferase2.4.2.290.519
4gi40EXQueuine tRNA-ribosyltransferase2.4.2.290.513
1y5xE89Queuine tRNA-ribosyltransferase2.4.2.290.512
3sm0AEKQueuine tRNA-ribosyltransferase2.4.2.290.509
1y5wNEZQueuine tRNA-ribosyltransferase2.4.2.290.501
4gh30EVQueuine tRNA-ribosyltransferase2.4.2.290.500
2qzrS79Queuine tRNA-ribosyltransferase2.4.2.290.498
4fr10V2Queuine tRNA-ribosyltransferase2.4.2.290.498
2potGUNQueuine tRNA-ribosyltransferase2.4.2.290.488
4fsa0V3Queuine tRNA-ribosyltransferase2.4.2.290.481
2pwuGUNQueuine tRNA-ribosyltransferase2.4.2.290.479
4hshQEIQueuine tRNA-ribosyltransferase2.4.2.290.478
4giy0WYQueuine tRNA-ribosyltransferase2.4.2.290.477
4gkt0O1Queuine tRNA-ribosyltransferase2.4.2.290.473
4hqvQEIQueuine tRNA-ribosyltransferase2.4.2.290.472
4q8pCKRQueuine tRNA-ribosyltransferase2.4.2.290.471
1f3eDPZQueuine tRNA-ribosyltransferase2.4.2.290.462
3elePLPAminotransferase/0.461
4gki0JNAminoglycoside 3'-phosphotransferase AphA1-IAB/0.453
1k4gAIQQueuine tRNA-ribosyltransferase2.4.2.290.450
1ozqPRFQueuine tRNA-ribosyltransferase2.4.2.290.450
4fewPP2Aminoglycoside 3'-phosphotransferase AphA1-IAB/0.443
1dg5TOPDihydrofolate reductase1.5.1.30.442
3ituIBMcGMP-dependent 3',5'-cyclic phosphodiesterase3.1.4.170.441
3qj5022Alcohol dehydrogenase class-31.1.1.10.441
4hvxQEIQueuine tRNA-ribosyltransferase2.4.2.290.441
4k9yK9YFocal adhesion kinase 12.7.10.20.441
4fps0UXQueuine tRNA-ribosyltransferase2.4.2.290.440
4l17DNQGlutamate receptor 2/0.440