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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1q4gBFLProstaglandin G/H synthase 11.14.99.1

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1q4gBFLProstaglandin G/H synthase 11.14.99.11.000
1eqhFLPProstaglandin G/H synthase 11.14.99.10.664
1eqgIBPProstaglandin G/H synthase 11.14.99.10.649
1ht834CProstaglandin G/H synthase 11.14.99.10.619
3n8xNIMProstaglandin G/H synthase 11.14.99.10.612
3n8zFLPProstaglandin G/H synthase 11.14.99.10.596
3n8wFLPProstaglandin G/H synthase 11.14.99.10.590
2oyeIM8Prostaglandin G/H synthase 11.14.99.10.586
2oyuIMSProstaglandin G/H synthase 11.14.99.10.559
4fm5DF0Prostaglandin G/H synthase 21.14.99.10.559
3n8yDIFProstaglandin G/H synthase 11.14.99.10.545
2aylFLPProstaglandin G/H synthase 11.14.99.10.542
3rr3FLRProstaglandin G/H synthase 21.14.99.10.532
3ntgD72Prostaglandin G/H synthase 21.14.99.10.524
4ph9IBPProstaglandin G/H synthase 21.14.99.10.523
4rrxLURProstaglandin G/H synthase 21.14.99.10.523
3pghFLPProstaglandin G/H synthase 21.14.99.10.515
5ikrID8Prostaglandin G/H synthase 21.14.99.10.505
3mqe416Prostaglandin G/H synthase 21.14.99.10.483
3q7dNPXProstaglandin G/H synthase 21.14.99.10.478
4m10ICDProstaglandin G/H synthase 21.14.99.10.468