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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1q45FMN12-oxophytodienoate reductase 31.3.1.42

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1q45FMN12-oxophytodienoate reductase 31.3.1.421.000
3hgsFMN12-oxophytodienoate reductase 31.3.1.420.600
1icpFMN12-oxophytodienoate reductase 11.3.1.420.597
3hgoFMN12-oxophytodienoate reductase 31.3.1.420.596
2hs8FMN12-oxophytodienoate reductase 31.3.1.420.589
2q3oFMN12-oxophytodienoate reductase 31.3.1.420.517
4tmbFMNOld yellow enzyme/0.511
3hgrFMN12-oxophytodienoate reductase 11.3.1.420.504
1icqFMN12-oxophytodienoate reductase 11.3.1.420.494
1h50FMNPentaerythritol tetranitrate reductase/0.489
1vyrFMNPentaerythritol tetranitrate reductase/0.483
3p74FMNPentaerythritol tetranitrate reductase/0.477
2hs6FMN12-oxophytodienoate reductase 31.3.1.420.473
4rnvFMNNADPH dehydrogenase 11.6.99.10.473
3f03FMNPentaerythritol tetranitrate reductase/0.469
4rnuFMNNADPH dehydrogenase 11.6.99.10.467
1vjiFMN12-oxophytodienoate reductase 11.3.1.420.466
1h63FMNPentaerythritol tetranitrate reductase/0.461
3p62FMNPentaerythritol tetranitrate reductase/0.452
3gkaFMNN-ethylmaleimide reductase/0.445
4a3uFMNNADH:flavin oxidoreductase/NADH oxidase/0.444
1h51FMNPentaerythritol tetranitrate reductase/0.441