sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Distribution of Cavity similarities measured by Shaper

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Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
1ptj	SND	NAD(P) transhydrogenase subunit alpha part 1	1.6.1.2

Complex with similar cavities

PDB ID	HET	Uniprot Name	EC Number	Cavity Similarity	Align
1ptj	SND	NAD(P) transhydrogenase subunit alpha part 1	1.6.1.2	1.000
1hzz	NAD	NAD(P) transhydrogenase subunit alpha part 1	1.6.1.2	0.595
2oor	NAD	NAD(P) transhydrogenase subunit alpha part 1	1.6.1.2	0.512
1u2d	NAD	NAD(P) transhydrogenase subunit alpha part 1	1.6.1.2	0.469
1u28	NAD	NAD(P) transhydrogenase subunit alpha part 1	1.6.1.2	0.455
2fsv	NAD	NAD(P) transhydrogenase subunit alpha part 1	1.6.1.2	0.455
1u2g	APR	NAD(P) transhydrogenase subunit alpha part 1	1.6.1.2	0.443