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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1pq6965Oxysterols receptor LXR-beta

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1pq6965Oxysterols receptor LXR-beta/1.000
3ipq965Oxysterols receptor LXR-alpha/0.613
1upw444Oxysterols receptor LXR-beta/0.554
1pqc444Oxysterols receptor LXR-beta/0.515
2aclL05Oxysterols receptor LXR-alpha/0.505
3ipuO40Oxysterols receptor LXR-alpha/0.489
1pq944BOxysterols receptor LXR-beta/0.487
4dk70KSOxysterols receptor LXR-beta/0.459
2f98NGVAklanonic acid methyl ester cyclase AcmA5.5.1.230.452
4e0u0MVCyclic dipeptide N-prenyltransferase/0.444
3n3zIBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.443