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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1pnoNAPNAD(P) transhydrogenase subunit beta1.6.1.2

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1pnoNAPNAD(P) transhydrogenase subunit beta1.6.1.21.000
1u31NDPNAD(P) transhydrogenase, mitochondrial1.6.1.20.605
1d4oNAPNAD(P) transhydrogenase, mitochondrial/0.584
1djlNAPNAD(P) transhydrogenase, mitochondrial1.6.1.20.578
1pt9TAPNAD(P) transhydrogenase, mitochondrial1.6.1.20.570
2fr8NAPNAD(P) transhydrogenase subunit beta1.6.1.20.566
2fsvNAPNAD(P) transhydrogenase subunit beta1.6.1.20.553
1nm5NAPNAD(P) transhydrogenase subunit beta1.6.1.20.536
1ptjNAPNAD(P) transhydrogenase subunit beta1.6.1.20.536
1hzzNAPNAD(P) transhydrogenase subunit beta1.6.1.20.530
4j16NAPNAD(P) transhydrogenase subunit beta/0.516
1pnqNDPNAD(P) transhydrogenase subunit beta1.6.1.20.447