Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1pj2NAINAD-dependent malic enzyme, mitochondrial1.1.1.38

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1pj2NAINAD-dependent malic enzyme, mitochondrial1.1.1.381.000
1pj3NADNAD-dependent malic enzyme, mitochondrial1.1.1.380.763
1efkNADNAD-dependent malic enzyme, mitochondrial1.1.1.380.740
1eflNADNAD-dependent malic enzyme, mitochondrial1.1.1.380.709
1do8NADNAD-dependent malic enzyme, mitochondrial1.1.1.380.601