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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1nv8SAMRelease factor glutamine methyltransferase2.1.1.297

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1nv8SAMRelease factor glutamine methyltransferase2.1.1.2971.000
1sg9SAMRelease factor glutamine methyltransferase2.1.1.2970.618
1vq1SAMRelease factor glutamine methyltransferase2.1.1.2970.594
1nv9SAHRelease factor glutamine methyltransferase2.1.1.2970.474