sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Distribution of Cavity similarities measured by Shaper

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Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
1nhh	ANP	DNA mismatch repair protein MutL

Complex with similar cavities

PDB ID	HET	Uniprot Name	EC Number	Cavity Similarity	Align
1nhh	ANP	DNA mismatch repair protein MutL	/	1.000
1gjv	AGS	[3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, mitochondrial	2.7.11.4	0.499
2zkj	ADP	[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 4, mitochondrial	2.7.11.2	0.498
2e0a	ANP	[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 4, mitochondrial	2.7.11.2	0.477
1i59	ANP	Chemotaxis protein CheA	2.7.13.3	0.473
3d2r	ADP	[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 4, mitochondrial	2.7.11.2	0.470
4wud	ANP	DNA gyrase subunit B	/	0.466
2zdy	ADP	[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 4, mitochondrial	2.7.11.2	0.456
4prv	ADP	DNA gyrase subunit B	/	0.451
1y0s	331	Peroxisome proliferator-activated receptor delta	/	0.448
1i5a	ACP	Chemotaxis protein CheA	2.7.13.3	0.440