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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1ngeATPHeat shock cognate 71 kDa protein

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1ngeATPHeat shock cognate 71 kDa protein/1.000
1nghATPHeat shock cognate 71 kDa protein/0.642
1ngiANPHeat shock cognate 71 kDa protein/0.588
1ngcADPHeat shock cognate 71 kDa protein/0.555
1atrADPHeat shock cognate 71 kDa protein/0.537
3hscADPHeat shock cognate 71 kDa protein/0.498
1ngbADPHeat shock cognate 71 kDa protein/0.495
2qwqADPHeat shock cognate 71 kDa protein/0.459
2qwrANPHeat shock cognate 71 kDa protein/0.446