sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Distribution of Cavity similarities measured by Shaper

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Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
1n8w	COA	Malate synthase G

Complex with similar cavities

PDB ID	HET	Uniprot Name	EC Number	Cavity Similarity	Align
1n8w	COA	Malate synthase G	/	1.000
1p7t	ACO	Malate synthase G	/	0.638
3saz	043	Malate synthase G	/	0.534
3qm4	PN0	Cytochrome P450 2D6	/	0.474
1nzy	BCA	4-chlorobenzoyl coenzyme A dehalogenase	3.8.1.7	0.470
2obx	INI	6,7-dimethyl-8-ribityllumazine synthase 2	2.5.1.78	0.470
3ada	NAD	Subunit alpha of sarocosine oxidase	/	0.452
1xe5	5FE	Plasmepsin-2	3.4.23.39	0.451
2dxi	ATP	Glutamate--tRNA ligase	6.1.1.17	0.449
3hl0	NAD	Maleylacetate reductase	/	0.448
3qpv	ADP	6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3	2.7.1.105	0.446
1fml	RTL	Retinol dehydratase	/	0.443
2hxz	H7J	Cathepsin S	3.4.22.27	0.443
1k6t	XN1	Gag-Pol polyprotein	3.4.23.16	0.442
4c1i	EH9	cGMP-dependent 3',5'-cyclic phosphodiesterase	3.1.4.17	0.442
1q5d	EPB	Epothilone C/D epoxidase	1.14	0.441