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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1n4vFADCholesterol oxidase1.1.3.6

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1n4vFADCholesterol oxidase1.1.3.61.000
1ijhFADCholesterol oxidase1.1.3.60.869
1b4vFADCholesterol oxidase1.1.3.60.842
1mxtFAECholesterol oxidase1.1.3.60.821
4u2lSFDCholesterol oxidase1.1.3.60.800
4xwrFADCholesterol oxidase1.1.3.60.792
1n4uFAECholesterol oxidase1.1.3.60.789
4xxgFADCholesterol oxidase1.1.3.60.780
1b8sFADCholesterol oxidase1.1.3.60.749
1cc2FADCholesterol oxidase1.1.3.60.724
4rekFADCholesterol oxidase1.1.3.60.721
1cboFADCholesterol oxidase1.1.3.60.715
4u2sFDACholesterol oxidase1.1.3.60.714
3gyiFADCholesterol oxidase1.1.3.60.698
3gyjFADCholesterol oxidase1.1.3.60.665
3cnjFADCholesterol oxidase1.1.3.60.652
3b6dFAECholesterol oxidase1.1.3.60.650
1n1pFADCholesterol oxidase1.1.3.60.608
1n4wFADCholesterol oxidase1.1.3.60.591
2gewFADCholesterol oxidase1.1.3.60.524
4u2tFADCholesterol oxidase1.1.3.60.520
3coxFADCholesterol oxidase1.1.3.60.494