Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1n2jPAFPantothenate synthetase6.3.2.1

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1n2jPAFPantothenate synthetase6.3.2.11.000
1n2iPAJPantothenate synthetase6.3.2.10.618
1n2gAPCPantothenate synthetase6.3.2.10.575
3cow52HPantothenate synthetase6.3.2.10.565
3coy53HPantothenate synthetase6.3.2.10.558
1n2hPAJPantothenate synthetase6.3.2.10.539
3ivxFG6Pantothenate synthetase6.3.2.10.536
1n2eAPCPantothenate synthetase6.3.2.10.532
3ioeA7DPantothenate synthetase6.3.2.10.532
2x3fAPCPantothenate synthetase/0.523
4ddhMS0Pantothenate synthetase6.3.2.10.517
3isjA8DPantothenate synthetase6.3.2.10.513
3iocA5DPantothenate synthetase6.3.2.10.500
1n2bPAFPantothenate synthetase6.3.2.10.488
3ivgFG5Pantothenate synthetase6.3.2.10.483
3coz54HPantothenate synthetase6.3.2.10.476
5kwvANPPantothenate synthetase/0.474
3imgBZ3Pantothenate synthetase6.3.2.10.472
3imeBZ2Pantothenate synthetase6.3.2.10.466
3imgBZ2Pantothenate synthetase6.3.2.10.464
3iobA4DPantothenate synthetase6.3.2.10.461
3iodA6DPantothenate synthetase6.3.2.10.460
5hg0SAMPantothenate synthetase/0.445