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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1n2hPAJPantothenate synthetase6.3.2.1

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1n2hPAJPantothenate synthetase6.3.2.11.000
1n2iPAJPantothenate synthetase6.3.2.10.630
3cow52HPantothenate synthetase6.3.2.10.570
3coy53HPantothenate synthetase6.3.2.10.526
3ivxFG6Pantothenate synthetase6.3.2.10.516
3ioeA7DPantothenate synthetase6.3.2.10.509
1n2gAPCPantothenate synthetase6.3.2.10.499
1n2eAPCPantothenate synthetase6.3.2.10.488
1n2jPAFPantothenate synthetase6.3.2.10.486
4ddhMS0Pantothenate synthetase6.3.2.10.469
3ivgFG5Pantothenate synthetase6.3.2.10.467
3iocA5DPantothenate synthetase6.3.2.10.463
2x3fAPCPantothenate synthetase/0.457
3isjA8DPantothenate synthetase6.3.2.10.447
3coz54HPantothenate synthetase6.3.2.10.446
3imeBZ2Pantothenate synthetase6.3.2.10.445