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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1n2eAPCPantothenate synthetase6.3.2.1

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1n2eAPCPantothenate synthetase6.3.2.11.000
1n2gAPCPantothenate synthetase6.3.2.10.749
1n2iPAJPantothenate synthetase6.3.2.10.526
1n2hPAJPantothenate synthetase6.3.2.10.515
1n2bPAFPantothenate synthetase6.3.2.10.494
1n2jPAFPantothenate synthetase6.3.2.10.480
3cow52HPantothenate synthetase6.3.2.10.474
3ioeA7DPantothenate synthetase6.3.2.10.457
2x3fAPCPantothenate synthetase/0.449
3coy53HPantothenate synthetase6.3.2.10.440